View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8868_low_3 (Length: 360)
Name: NF8868_low_3
Description: NF8868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8868_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 36 - 346
Target Start/End: Complemental strand, 31361489 - 31361179
Alignment:
| Q |
36 |
tagggagttagttggcaatcagatgtctggaaatattcctccagagcttgggaatctaacccagattcgaacaatgtaagcactttattatgaaagccga |
135 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |
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| T |
31361489 |
tagggtgttagttggcaatcagatgtctggaaatattcctcccgagcttgggaatctaacccagattcgaatactgtaagcactttattatgaaagccaa |
31361390 |
T |
|
| Q |
136 |
atgttaaatgtctacttttatttccatggctttgaatcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactgga |
235 |
Q |
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||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| | |
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| T |
31361389 |
atgttcaaagttcacttttatttccatggctttgaatcaacatttaccattttgtttttaaaaaatatataggcaattttcctcgaacaattttactgta |
31361290 |
T |
|
| Q |
236 |
gaactacccatgacattggccaagctcattacattgcaagatttgtaagtttcaaacttttatgatgtttagagaagaccaaattttgatataattttta |
335 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31361289 |
gaactaccaatgacattggccaagctcattacattgcaagatttgtaagtttcaagcttttatgatgtttagagaagaccaaattttgatataattttta |
31361190 |
T |
|
| Q |
336 |
tgccctctctg |
346 |
Q |
| |
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|| |||||||| |
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| T |
31361189 |
tgtcctctctg |
31361179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 31387999 - 31387872
Alignment:
| Q |
171 |
atcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatgacattggccaagctcattacatt |
270 |
Q |
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| T |
31387999 |
atcataatttactgttttgttttacaattatatataggcgattttcctctaataattttactggagaactacctgcgacattcgccaagctcactacatt |
31387900 |
T |
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| Q |
271 |
gcaagatttgtaagtttcaaacttttat |
298 |
Q |
| |
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|||||||||||||| |||||| |||||| |
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| T |
31387899 |
gcaagatttgtaagcttcaaatttttat |
31387872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 31308182 - 31308047
Alignment:
| Q |
149 |
acttttatttccatggctttgaatcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatga |
248 |
Q |
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||||| ||||||||| ||| ||||||| | ||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
31308182 |
actttgatttccatgacttagaatcataagatactgttttgtttttcaatgatatataggcgattttcctctaacaattttactggagaactacctgcga |
31308083 |
T |
|
| Q |
249 |
cattggccaagctcattacattgcaagatttgtaag |
284 |
Q |
| |
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|||| || ||||||| ||||||| |||||||||||| |
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| T |
31308082 |
cattagctaagctcactacattggaagatttgtaag |
31308047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 31418393 - 31418535
Alignment:
| Q |
149 |
acttttatttccatggctttgaatcatcatttaccgttttgttttta-aattatatataggcgattttcctcgaacaattttactggagaactacccatg |
247 |
Q |
| |
|
||||| |||| ||| |||| ||||||| |||||| | ||| |||||| |||||||||||||||| |||| || ||||| ||||||||||||||||| | |
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| T |
31418393 |
actttgattttcattgcttagaatcataatttacagatttttttttacaattatatataggcgactttcatctaacaaatttactggagaactacctgcg |
31418492 |
T |
|
| Q |
248 |
acattggccaagctcattacattgcaagatttgtaagtttcaa |
290 |
Q |
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||||| |||||||||| |||||||||||| ||||||||||||| |
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| T |
31418493 |
acattcgccaagctcactacattgcaagagttgtaagtttcaa |
31418535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 284
Target Start/End: Complemental strand, 31324907 - 31324778
Alignment:
| Q |
155 |
atttccatggctttgaatcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatgacattgg |
254 |
Q |
| |
|
||||| ||||||| ||||||| |||||| ||||||||||| ||||||||||||| | | ||||| |||||||||||| |||||||||| | |||||| |
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| T |
31324907 |
atttctatggcttagaatcataatttactgttttgtttttcaattatatataggaaaatgtcctctaacaattttactagagaactacctacaacattgt |
31324808 |
T |
|
| Q |
255 |
ccaagctcattacattgcaagatttgtaag |
284 |
Q |
| |
|
||||| ||| |||||||| ||||||||||| |
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| T |
31324807 |
ccaaggtcactacattgcgagatttgtaag |
31324778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 303
Target Start/End: Complemental strand, 31256697 - 31256585
Alignment:
| Q |
191 |
ttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatgacattggccaagctcattacattgcaagatttgtaagtttcaa |
290 |
Q |
| |
|
|||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
31256697 |
ttttcaattatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaa |
31256598 |
T |
|
| Q |
291 |
acttttatgatgt |
303 |
Q |
| |
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| ||||||||||| |
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| T |
31256597 |
atttttatgatgt |
31256585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 155 - 297
Target Start/End: Complemental strand, 31293746 - 31293602
Alignment:
| Q |
155 |
atttccatggctttgaatcatcatttaccgttttgtttttaaattat--atataggcgattttcctcgaacaattttactggagaactacccatgacatt |
252 |
Q |
| |
|
||||| ||||||| ||||||| |||| | ||||||||||| |||| | ||||||| | | ||||| || |||||||||||||||||||| ||||| |
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| T |
31293746 |
atttctatggcttagaatcataatttgctgttttgtttttcaattgtgtatataggaaaatgtcctctaataattttactggagaactacctgccacatt |
31293647 |
T |
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| Q |
253 |
ggccaagctcattacattgcaagatttgtaagtttcaaactttta |
297 |
Q |
| |
|
||| ||||||| |||||||| |||||||||| |||||| ||||| |
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| T |
31293646 |
ggcaaagctcactacattgcgcgatttgtaagcttcaaagtttta |
31293602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 31293879 - 31293806
Alignment:
| Q |
51 |
caatcagatgtctggaaatattcctccagagcttgggaatctaacccagattcgaacaatgtaagcactttatt |
124 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
31293879 |
caatcaaatgtctggaatcattcctcgtgagcttggaaatctaacccagattcgaacactgtaagtactttatt |
31293806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 31375695 - 31375603
Alignment:
| Q |
199 |
tatatataggcgattttcctcgaacaattttactggagaactacccatgacattggccaagctcattacattgcaagatttgtaagtttcaaa |
291 |
Q |
| |
|
||||||||||| | |||| || |||||||||||||| |||||||| ||||||||| ||||| | ||||||| ||||||||||| |||||| |
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|
| T |
31375695 |
tatatataggcaaatttcatctaacaattttactggcgaactacctgcgacattggcaaagctgactacattgatagatttgtaagcttcaaa |
31375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 31256856 - 31256761
Alignment:
| Q |
20 |
tttaacttgaaatatatagggagttagttggcaatcagatgtctggaaatattcctccagagcttgggaatctaacccagattcgaacaatgtaag |
115 |
Q |
| |
|
||||||||||||| ||||||| ||| | |||||| ||||| | ||||||||||| |||||||||||||||| |||||| |||||| |||||| |
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|
| T |
31256856 |
tttaacttgaaatgaatagggatttaacggccaatcaaatgtcggaaaatattcctcatgagcttgggaatctaagccagatacgaacactgtaag |
31256761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 31308314 - 31308263
Alignment:
| Q |
52 |
aatcagatgtctggaaatattcctccagagcttgggaatctaacccagattc |
103 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
31308314 |
aatcaaatgtttggaaatattcctcctgagcttggaaatctaacccagattc |
31308263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 31375872 - 31375807
Alignment:
| Q |
59 |
tgtctggaaatattcctccagagcttgggaatctaacccagattcgaacaatgtaagcactttatt |
124 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||| ||| ||||||| | |||||| |||||||| |
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|
| T |
31375872 |
tgtctggaaatcttcctcctgagcttgggtatctaagccaaattcgaagactgtaagaactttatt |
31375807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 36214446 - 36214383
Alignment:
| Q |
61 |
tctggaaatattcctccagagcttgggaatctaacccagattcgaacaatgtaagcactttatt |
124 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||||| |||| || | ||||||||||||||| |
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|
| T |
36214446 |
tctggaaatcttcctcctgagtttgggaatctaacccaaattcaaagagtgtaagcactttatt |
36214383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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