View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8868_low_5 (Length: 321)
Name: NF8868_low_5
Description: NF8868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8868_low_5 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 38249 - 38550
Alignment:
| Q |
1 |
cgcaatcttcacaagcatttgaagaactcactgagatgaattttggtgttggatcccttccgctcatactctttcgtcattatcaaaacttccaatacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249 |
cgcaatcttcacaagcatttgaagaactcactgagatgaattttggtgttgga--ccttccgctcatactctttcgtcattatcaaaacttccaatacac |
38346 |
T |
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| Q |
101 |
cccacaaaaccgcacttgacgtccacaacagctttccagaacaacaaaggcactcactgttactcactctaaacaaaccacgaccaccagctcgagaacc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38347 |
cccacaaaaccgcacttgacgtccacaagagctttccaaaacaacaaaggcactcaccgttactcactctaaacaaaccacgaccaccagctcgagaacc |
38446 |
T |
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| Q |
201 |
atccctattccctactcacgctatctgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447 |
atccctattccctactcacgctatctgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaa |
38546 |
T |
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| Q |
301 |
caac |
304 |
Q |
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|||| |
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| T |
38547 |
caac |
38550 |
T |
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Back To:
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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 32958584 - 32958507
Alignment:
| Q |
227 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaacaac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
32958584 |
gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaac |
32958507 |
T |
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