View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_high_1 (Length: 673)
Name: NF8869_high_1
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 44 - 362
Target Start/End: Complemental strand, 19049803 - 19049485
Alignment:
| Q |
44 |
cagagaccgattcacgagaggacagacacacggtgtgaccacaaagcagcacaaccgtcgtaaaccccatccctaggtcgacgcaaatcaacgtgtcgca |
143 |
Q |
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| T |
19049803 |
cagagaccgattcacgagaggacagacacacggtgtgaccacaaagcagcacaactgtcgtaaaccccatccctaggtcgacgcaaatcaacgtgtcgca |
19049704 |
T |
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| Q |
144 |
aacgcgaaaccaagattagaccatagaacagtaccgcaaaaacacgacggcaacaagaagccaccaaaagaactcgattgcaccaccaaaagccatggtc |
243 |
Q |
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| T |
19049703 |
aacgcgaaaccaagattagaccatagaacagtaccgcaaaaacgcggcggcaacaagaagccaccaaaagaactcgattgcaccaccaaaagccatggtc |
19049604 |
T |
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| Q |
244 |
tacatcgtggcggccagaattgaggtgcggcagagggttgcggctgtggaggtttgttagagagaagggagcggaaacgagaagaaaagaaaggcgtcta |
343 |
Q |
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| T |
19049603 |
tacatcgtggcggccagaattgaggtgcggcaaagggttgcggctgtggaggtttgttagagagaggggagcggaaacgagaagaaaagaaaggcgtcta |
19049504 |
T |
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| Q |
344 |
tgactatagctttattagg |
362 |
Q |
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| T |
19049503 |
tgactatagctttattagg |
19049485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 493 - 655
Target Start/End: Complemental strand, 19049353 - 19049191
Alignment:
| Q |
493 |
gaaaagatgattgtctcttaataataccaatagccatctcataattaaaggccaataaatactctaattgaataaccacaagaaagcaactctcttctct |
592 |
Q |
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| T |
19049353 |
gaaaagatgattgtctcttaataataccaatagccatctcataattaaaggccaataaatactctaattgaataaccacgagaaagcaactctcttctct |
19049254 |
T |
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| Q |
593 |
taattttggttcaccatgccttctatataaacttttaatggatgtaaattcgtaccattgaaa |
655 |
Q |
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| T |
19049253 |
taattttggttcaccatgccttctatataaacttttaatggatgtaaatttgtaccattgaaa |
19049191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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