View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8869_high_15 (Length: 221)
Name: NF8869_high_15
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 7447487 - 7447606
Alignment:
| Q |
85 |
aaagagaagagatctatgatagataaata----aatacgaaccctgaacataacgccggcgacgccgaataagacggcgatgaaaccggcgtaatcgatc |
180 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7447487 |
aaagagaagagatctatgatagatagatagataaatacgaaccctgaacataacgccggcgacgccgaataagacggcgatgaaaccggcgtaatcgatc |
7447586 |
T |
|
| Q |
181 |
ggaagatcttgtggagctat |
200 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
7447587 |
ggaagatcctgtggagctat |
7447606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 7455629 - 7455748
Alignment:
| Q |
85 |
aaagagaagagatctatgatagataaata----aatacgaaccctgaacataacgccggcgacgccgaataagacggcgatgaaaccggcgtaatcgatc |
180 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7455629 |
aaagagaagagatctatgatagatagatagataaatacgaaccctgaacataacgccggcgacgccgaataagacggcgatgaaaccggcgtaatcgatc |
7455728 |
T |
|
| Q |
181 |
ggaagatcttgtggagctat |
200 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
7455729 |
ggaagatcctgtggagctat |
7455748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University