View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_high_3 (Length: 435)
Name: NF8869_high_3
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 37136458 - 37136056
Alignment:
| Q |
16 |
caatagcttctgcttggatttctggaggataaagaggtaagccggctctttgacaccttttcattcttgtgttccaaaagtttttgatttcgttatctgt |
115 |
Q |
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| T |
37136458 |
caatagcttctgcttggatttctggaggataaagaggtaagccggctctttgacgccttttcattcttgtgttccaaaagtttttgatttcgttatctgt |
37136359 |
T |
|
| Q |
116 |
tcttccgggcaactgaaaaaataacaaaacattttcaggtgctcggaaaaagannnnnnnataaacaaatgttaatagttaatttgtgtgcagtaaagat |
215 |
Q |
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| T |
37136358 |
tcttccgggcaactgaaaaaacaacaaaacattttcaggtgctcggagaaagatttttttataaacaaatgttaatagttaatttgtttgcagtaaagat |
37136259 |
T |
|
| Q |
216 |
cgaattgaactcttaatactttatcgagaaacaataaacaagttctaccaagcaaacttctcaacaaataatttgtatcaagcaaagtacacaaaagaca |
315 |
Q |
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| T |
37136258 |
cgaattgaactcttaatactttaccgagaaacaataaacaagttctaccaagcaaacttctcaacaaataatttgtatcaagcaaagtacacaaaagaca |
37136159 |
T |
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| Q |
316 |
taaagatgagtattttagccttaaatgagagcttttagaaagtagggcacatatttgaaagaaagaaacaaaaatggcaatttgatattcagacaatgat |
415 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37136158 |
taaagatgagtattttaaccttaaatgagagcttttagaaagtagggcacatatttgaaagaaacaaacaaaaatggcaatttgatattcagacaatgat |
37136059 |
T |
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| Q |
416 |
tga |
418 |
Q |
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| T |
37136058 |
tga |
37136056 |
T |
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