View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8869_high_4 (Length: 420)

Name: NF8869_high_4
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8869_high_4
NF8869_high_4
[»] chr4 (3 HSPs)
chr4 (23-411)||(47503510-47503893)
chr4 (208-282)||(28336545-28336619)
chr4 (61-109)||(3172020-3172068)
[»] chr3 (4 HSPs)
chr3 (211-282)||(11483872-11483943)
chr3 (231-281)||(22310118-22310168)
chr3 (232-281)||(45207373-45207422)
chr3 (231-286)||(27175121-27175176)
[»] chr1 (1 HSPs)
chr1 (208-280)||(49130006-49130078)
[»] chr2 (3 HSPs)
chr2 (227-287)||(9070891-9070951)
chr2 (227-278)||(18140999-18141050)
chr2 (232-282)||(42083394-42083444)
[»] scaffold0477 (1 HSPs)
scaffold0477 (233-281)||(1136-1184)
[»] chr6 (2 HSPs)
chr6 (233-281)||(4650119-4650167)
chr6 (231-282)||(446014-446065)
[»] chr5 (1 HSPs)
chr5 (231-287)||(22635983-22636039)
[»] chr8 (2 HSPs)
chr8 (202-277)||(5336241-5336316)
chr8 (227-281)||(23890359-23890413)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 411
Target Start/End: Complemental strand, 47503893 - 47503510
Alignment:
Q  23 atgcggtcaccatttttcaattaatgctactcactccgtctgtatgaaatggttaagtagatcaggtattcagggacgaagggagtagttaaataggccg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| | ||||| |||||||||||||||||||||    
T  47503893 atgcggtcaccatttttcaattaatgctactcactccgtctgtgtgaaatggttaagtaggtcaagtattgaaggacggagggagtagttaaataggccg 47503794  T
Q  123 ctgccctattttaccctggaactataacctaggtcgctttatttaacgatgcatgttagcttgttgtgtaagattggcaatgtgattaggagggaaatta 222  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47503793 ctgccctattttaccctagaactataacctaggtcgctctatttaatgatgcatgttagcttgttgtgtaagattggcaatgtgattaggagggaaatta 47503694  T
Q  223 gcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgatatgtatcattgttgattacaaatctaattgattgaa 322  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  47503693 tcatagcaattagggttaagcaattgcttgacttaattagcttttagagtaagtatga-----tatgtatcattgttgattacaaatctaattgattgaa 47503599  T
Q  323 tgatgaaataacagaatnnnnnnnctttggattaaatattttccctcttaaaactgatgcaatccaaataaactgagtagtagtataat 411  Q
    |||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47503598 tgatgaaataacagaataaaaaaacttcggattaaatattttccctcttaaaactgatgcaatccaaataaactgagtagtagtataat 47503510  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 28336545 - 28336619
Alignment:
Q  208 ttaggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 282  Q
    ||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28336545 ttaggagggaaatcacaaaagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 28336619  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 3172068 - 3172020
Alignment:
Q  61 tctgtatgaaatggttaagtagatcaggtattcagggacgaagggagta 109  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||||||||||    
T  3172068 tctgtgtgaaatggtcaagtagatcaagtattgagggacgaagggagta 3172020  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 11483872 - 11483943
Alignment:
Q  211 ggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 282  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11483872 ggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagcttttagagtaagtatgata 11483943  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 22310118 - 22310168
Alignment:
Q  231 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 281  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||||||||    
T  22310118 attagggttaagcatttacttgacctaataagcttttagaataagtatgat 22310168  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 45207422 - 45207373
Alignment:
Q  232 ttagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 281  Q
    |||||||||||  || ||||||||||||||||||||| ||||||||||||    
T  45207422 ttagggttaagttatagcttgacctaattagcttttaaagtaagtatgat 45207373  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 27175121 - 27175176
Alignment:
Q  231 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgat 286  Q
    ||||||||| |||||  |||||||||||| |||||| | |||||||||||||||||    
T  27175121 attagggtttagcaaaagcttgacctaataagctttcatagtaagtatgatatgat 27175176  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 49130006 - 49130078
Alignment:
Q  208 ttaggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatga 280  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49130006 ttaggagggaaattagcatagtaattagggctaagcaattgcttgacctaattagcttttagagtaagtatga 49130078  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 9070951 - 9070891
Alignment:
Q  227 agcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgata 287  Q
    |||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||    
T  9070951 agcaattagggttaagcatttgcttgacctaattggcttttataataagtatgatatgata 9070891  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 18140999 - 18141050
Alignment:
Q  227 agcaattagggttaagcaattgcttgacctaattagcttttagagtaagtat 278  Q
    |||||||||||||||||| ||||||||||||||| ||||||| | |||||||    
T  18140999 agcaattagggttaagcatttgcttgacctaattggcttttataataagtat 18141050  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 42083444 - 42083394
Alignment:
Q  232 ttagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 282  Q
    |||||||||||  || ||||||||||||||||||||| |||||||||||||    
T  42083444 ttagggttaagttatagcttgacctaattagcttttaaagtaagtatgata 42083394  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 1136 - 1184
Alignment:
Q  233 tagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 281  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  1136 tagggctaaacaattgctttacctaattagcttttagagtaagtatgat 1184  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 4650119 - 4650167
Alignment:
Q  233 tagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 281  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  4650119 tagggctaaacaattgctttacctaattagcttttagagtaagtatgat 4650167  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 446014 - 446065
Alignment:
Q  231 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgata 282  Q
    ||||||||||||||  |||||||| |||| |||||||| |||||||||||||    
T  446014 attagggttaagcatctgcttgacataataagcttttaaagtaagtatgata 446065  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 22635983 - 22636039
Alignment:
Q  231 attagggttaagcaattgcttgacctaattagcttttagagtaagtatgatatgata 287  Q
    ||||||||| ||||   ||||| ||||||||||||||| ||||||||||||||||||    
T  22635983 attagggtttagcataagcttgccctaattagcttttaaagtaagtatgatatgata 22636039  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 5336316 - 5336241
Alignment:
Q  202 atgtgattaggagggaaattagcatagcaattagggttaagcaattgcttgacctaattagcttttagagtaagta 277  Q
    ||||| || ||||||||| ||  | |||||||||||||||||| |||||||||||||||  |||||| | ||||||    
T  5336316 atgtgtttgggagggaaaatacaaaagcaattagggttaagcatttgcttgacctaattgacttttataataagta 5336241  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 23890413 - 23890359
Alignment:
Q  227 agcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgat 281  Q
    ||||||||||||| |||||  ||||||||| || |||||||| ||||||||||||    
T  23890413 agcaattagggtttagcaaaagcttgaccttataagcttttatagtaagtatgat 23890359  T

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