View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_low_10 (Length: 250)
Name: NF8869_low_10
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 29320998 - 29321234
Alignment:
| Q |
4 |
ttatcacgatttaccctagctcacacgatttatccttaatcannnnnnnnngtaatgcttagaaacacgtatttgcttctggaaacaatgttctacagag |
103 |
Q |
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| T |
29320998 |
ttatcacgatttaccctagctcacacgatttatccttaatcatttttttt-gtaatgcttagaaacacgcatttgcttctgaaaacaatgttctacagag |
29321096 |
T |
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| Q |
104 |
tacacagaaaaattacttgacatggcatgatttctataaggtaatgcatcatcaagaaaacacttgagcttaaaagcttattcaatatcatatatcatat |
203 |
Q |
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| T |
29321097 |
tacacagaaaaattacttgacatggcatgatttctataaggtaatgcatcatcaagaaaacacttgagcttaaaagcttattcaatatcatatatcatat |
29321196 |
T |
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| Q |
204 |
atatgcatacataccttccctttgatgttactctctgc |
241 |
Q |
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| T |
29321197 |
atatgcatacataccttccctttgatgttactctctgc |
29321234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 29303885 - 29304045
Alignment:
| Q |
63 |
tagaaacacgtatttgcttctggaaacaatgttctacagagtacacagaaaaattacttgacatggcatga-----------tttctataaggtaatgca |
151 |
Q |
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| T |
29303885 |
tagaaacacatacatgcttctcgaaacaatgtactacatagtacaca--aaaattacatgacatgacatgacatgattgctttttctacaaggtaatgca |
29303982 |
T |
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| Q |
152 |
tcatcaagaaaacacttgag-cttaaaagcttattcaatatcatatatcatatatatgcatac |
213 |
Q |
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| T |
29303983 |
tcatcgaaaaaacaattgagagttcaaagctcattcaatatcatatgtcatatagatacatac |
29304045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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