View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_low_14 (Length: 241)
Name: NF8869_low_14
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29320757 - 29320534
Alignment:
| Q |
1 |
tttattaatggatgcttgcaccatacattcctgtgcctgaagttgaccattacgaaccttcaataatatttgctgatttcatacatatcatgttatttgt |
100 |
Q |
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| T |
29320757 |
tttattaatggatgcttgcaccatacattcctgtgcctgaagttgaccattacgaacctgcaataatatttgctgatttcatacatatcatgttatttgt |
29320658 |
T |
|
| Q |
101 |
aatgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29320657 |
aatgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtc |
29320558 |
T |
|
| Q |
201 |
actggatgatttggaccctcgagt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29320557 |
actggatgatttggaccctcgagt |
29320534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 29331619 - 29331512
Alignment:
| Q |
102 |
atgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtca |
201 |
Q |
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||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
29331619 |
atgctaataatttcattcatatatgattctctcttccattttgctaccacaggacatgatgctatactttaacgaagttgcgatactggtccttaagtca |
29331520 |
T |
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| Q |
202 |
ctggatga |
209 |
Q |
| |
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|||||||| |
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| T |
29331519 |
ctggatga |
29331512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 29303299 - 29303159
Alignment:
| Q |
69 |
tttgctgatttcatacatatcatgttatttgtaatgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatac |
168 |
Q |
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|||||||||||||| |||||| ||||||| || ||||| ||||| | ||| ||||| |||||| |||| ||||||| ||| |||||||||||| | ||| |
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| T |
29303299 |
tttgctgatttcattcatatcctgttattcgtgatgcttacaatttaatttatatatgattctttctt-ccttttggtactacaggacatgatacagtac |
29303201 |
T |
|
| Q |
169 |
tttaaccaagttgcgatgctggcccttaagtcactggatgat |
210 |
Q |
| |
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||| |||||||||| | |||| |||||||| ||| |||||| |
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| T |
29303200 |
tttgaccaagttgcaagtctggtccttaagttacttgatgat |
29303159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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