View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_low_2 (Length: 436)
Name: NF8869_low_2
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 290 - 418
Target Start/End: Complemental strand, 24642184 - 24642056
Alignment:
| Q |
290 |
tctttctttaaatactaatattttcctacctttttgttcatcattctttgctctttttgtttattgttcaatcaaaacagaatgattacgcataattaca |
389 |
Q |
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| T |
24642184 |
tctttctttaaatactactattttcctacctttttgttcatcattctttgctctttttgttttttgttcaatcaaaacagaatgattacgcgtaattaca |
24642085 |
T |
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| Q |
390 |
aagcttattttattcttatgggtttgttg |
418 |
Q |
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| T |
24642084 |
aagcttacttttttctgatgggtttgttg |
24642056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 418
Target Start/End: Complemental strand, 24694638 - 24694511
Alignment:
| Q |
289 |
atctttctttaaatactaatattttcctacctttttgttcatcattctttgctctttttgtttatt-gttcaatcaaaacagaatgattacgcataatta |
387 |
Q |
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| T |
24694638 |
atctttctttaaatacta---ttttcctacctttttgttcatcattcgttgctctttttgtttttttgttcaatcaaaacagaatgattacgcgtaatta |
24694542 |
T |
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| Q |
388 |
caaagcttattttattcttatgggtttgttg |
418 |
Q |
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| T |
24694541 |
caaagcttattttattctgatgggtttgttg |
24694511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 24693490 - 24693425
Alignment:
| Q |
353 |
ttgttcaatcaaaacagaatgattacgcataattacaaagcttattttattcttatgggtttgttg |
418 |
Q |
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| T |
24693490 |
ttgttcaatcaaaacagaatgattacgcataattacaaagcttattttattttgatgggtttgttg |
24693425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 24648887 - 24648824
Alignment:
| Q |
358 |
caatcaaaacagaatgattacgcataattac---aaagcttattttattcttatgggtttgttg |
418 |
Q |
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| T |
24648887 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttg |
24648824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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