View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_low_5 (Length: 376)
Name: NF8869_low_5
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 192 - 362
Target Start/End: Complemental strand, 44565321 - 44565151
Alignment:
| Q |
192 |
acatacattttcattcaactcttgaaactcaggtgagttgatgatagccaaaaccggagccagatagacaaaagaaggcccttgtatcaacggcagccga |
291 |
Q |
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| T |
44565321 |
acatacattttcattcaactcttgaaactcaggtgagttgatgatagccaaaaccggagccagatagacaaaagaaggcccttgtatcaacggcagccga |
44565222 |
T |
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| Q |
292 |
gacccaaaaatagtgtgcaggagtgtagtcactccagacactaagagcacagtacataccattgctgcagt |
362 |
Q |
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| T |
44565221 |
gacccaaaaatagtgtgcaggagtgtagtcactccagacactaagagcacagtacataccattgctgcagt |
44565151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 44565499 - 44565388
Alignment:
| Q |
14 |
agtttgaacttggaacagtgatgtgaacaacaatcatcaactaaaacataaaaatgaaaatacacacacattccatataatccttgaaacttcaaggaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565499 |
agtttgaacttggaacagtgatgtgaacaacaatcatcaactaaaacataaaaatgaaaatacacacacattccatataatccttgaaacttcaaggaac |
44565400 |
T |
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| Q |
114 |
aattttggttac |
125 |
Q |
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| T |
44565399 |
aattttggttac |
44565388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 36035772 - 36035924
Alignment:
| Q |
192 |
acatacattttcattcaactcttgaaactcaggtgagttgatgatagccaaaaccggagccagatagacaaaagaaggcccttgtatcaacggcagccga |
291 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||| || |
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| T |
36035772 |
acatacattttcattcaatccttgaaactcgggtgagttgatgatcgccaaaactggagccagataaacaaaagaaggcccttgtatcaagggcaacctg |
36035871 |
T |
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| Q |
292 |
gacccaaaaatagtgtgcaggagtgtagtcactccagacactaagagcacagt |
344 |
Q |
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| T |
36035872 |
gacccaaaaaatgtatgcaacaatgtagtcactccagacacaaagagcacagt |
36035924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 36035549 - 36035631
Alignment:
| Q |
23 |
ttggaacagtgatgtgaacaacaatcatcaactaaaacataaaaat-gaaaatacacacacattccatataatccttgaaact |
104 |
Q |
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|||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |
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| T |
36035549 |
ttggaacaataatgtggacaacaatcatcatctaaaacataaaaatataaaatacacacacattccacttaatccttaaaact |
36035631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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