View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8869_low_7 (Length: 312)
Name: NF8869_low_7
Description: NF8869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8869_low_7 |
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| [»] scaffold0515 (1 HSPs) |
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| [»] scaffold0317 (1 HSPs) |
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| [»] scaffold0306 (1 HSPs) |
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Alignment Details
Target: scaffold0515 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 375 - 125
Alignment:
| Q |
31 |
attatactcaaagtcataaaatatatatgaatagttctctatatcacaaatttaaatacattacgattgatcaagacaattgtatgaagaatactgaatc |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
375 |
attatactcaaagtcataaaatatatatgaatagttctctatatcacaaatttaaatacattacgattgatcaagacaattgtatgaagaatattgaatc |
276 |
T |
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| Q |
131 |
taaagtaactgaaaatttcaaagtggatgattctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtc |
230 |
Q |
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| T |
275 |
taaagtaactgaaaatttcaaagtggatgattctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtc |
176 |
T |
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| Q |
231 |
cagcagctgtcgagacattgaataggagcagaaaatccatcttaagtgaag |
281 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
175 |
cagcagctgtccagacattgaataggagcagaaaatccatcttaagcgaag |
125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 31 - 281
Target Start/End: Original strand, 18832 - 19082
Alignment:
| Q |
31 |
attatactcaaagtcataaaatatatatgaatagttctctatatcacaaatttaaatacattacgattgatcaagacaattgtatgaagaatactgaatc |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18832 |
attatactcaaagtcataaaatatatatgaatagttctctatatcacaaatttaaatacattacgattgatcaagacaattgtatgaagaatattgaatc |
18931 |
T |
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| Q |
131 |
taaagtaactgaaaatttcaaagtggatgattctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18932 |
taaagtaactgaaaatttcaaagtggatgattctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtc |
19031 |
T |
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| Q |
231 |
cagcagctgtcgagacattgaataggagcagaaaatccatcttaagtgaag |
281 |
Q |
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| T |
19032 |
cagcagctgtccagacattgaataggagcagaaaatccatcttaagcgaag |
19082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 377 - 127
Alignment:
| Q |
31 |
attatactcaaagtcataaaatatatatgaatagttctctatatcacaaatttaaatacattacgattgatcaagacaattgtatgaagaatactgaatc |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
377 |
attatactcaaagtcataaaatatatatgaatagttctctatatcacaaatttaaatacattacgattgatcaagacaattgtatgaagaatattgaatc |
278 |
T |
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| Q |
131 |
taaagtaactgaaaatttcaaagtggatgattctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277 |
taaagtaactgaaaatttcaaagtggatgattctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtc |
178 |
T |
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| Q |
231 |
cagcagctgtcgagacattgaataggagcagaaaatccatcttaagtgaag |
281 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
177 |
cagcagctgtccagacattgaataggagcagaaaatccatcttaagcgaag |
127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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