View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_high_1 (Length: 576)
Name: NF8870_high_1
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Original strand, 34674480 - 34675026
Alignment:
| Q |
18 |
taaactacttttatggttgctaagtttaatgcgatgattttattcattttatcgggaccttgacacagacatgtgcaaatagttgaagaaattctattac |
117 |
Q |
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| T |
34674480 |
taaactacttttatggttgctaagtttaatgcgatgattttattcattttatcggaaccttgacacagacatgtgtaaatagttgaagaaattctattac |
34674579 |
T |
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| Q |
118 |
ggtaaatgtgaaatgagttagaagttctacattgtttnnnnnnnntagaggccgaacattttataagtgggaggacccacaaactcattagtgtccggtt |
217 |
Q |
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| T |
34674580 |
ggtaaatgtgaaatgagttagaagttctacattgtttaaaaaaaatagaggctgaacattttataagtgggaggacccacgaactcattagtgtccggtt |
34674679 |
T |
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| Q |
218 |
catttgtgtggttgcttttaattcaatgtggatgatcccccatgcttccctctatgacccaacaatggtattaaagtcgatgattccacgaatgatgttc |
317 |
Q |
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| T |
34674680 |
catttgtgtggttgcttttaattcaatgtggatgatccgccatgcttccctctatgacccaacaatggtattaaagtcgacgattccacgaatgatgttc |
34674779 |
T |
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| Q |
318 |
aagtgacgtgttcggttgaaagagaaccaatggcagtgcaagtaagtgtgtgtggatgaaaaagcttacacttgaaggggagtatagtgaatggaaatca |
417 |
Q |
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| T |
34674780 |
aagtgacgtgttctgttgaaagagaaccaatggcagtgcaagtaagtgtgtgtggatgaaaaagcttacacttgaaggggagtatagtgaatggaaatca |
34674879 |
T |
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| Q |
418 |
ctcgtacttgagagcatagattgttgtggcaagtgtgaggtgagtaagaattcacatatttcttaaaaaagtagaggttgaacaatttacaagtgaaatg |
517 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674880 |
ctcgtacttgagagtggagattgttgtggcaagtgtgaggtgagtaagaattcacatatttcttaaaaaagtagaggttgaacaatttacaagtgaaatg |
34674979 |
T |
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| Q |
518 |
tccataaatctattatcttaaaatttcggatcaagatgtgatgtcca |
564 |
Q |
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| T |
34674980 |
tccataaatctattatcttaaaattttggatcaagatgtgatgtcca |
34675026 |
T |
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