View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_11 (Length: 240)
Name: NF8870_low_11
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 39512254 - 39512463
Alignment:
| Q |
22 |
ccagtgaatttgagctaactttaatgttgagggaaaatgtccaaggatatctaacttttaagtattgaaaggtcaatatgtcaccacctgatgtagcacc |
121 |
Q |
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| T |
39512254 |
ccagtgaatttgagttaactttaatgttgagggaaaatgtccaaggatatctaacttctaagtattgaaaggtcaagatgtcaccacctgatgtagcacc |
39512353 |
T |
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| Q |
122 |
aatggtggttgatgtggtgaatttacaaatctttgacgcttatcagatttctgtacagattatgcacgatctcttctcatggttggctaatagcccgatc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39512354 |
aatggtggttgatgtggtgaatttacaaatctttgacgcttatcagatttctgtacagattatgcacgatctcttctcatggttggctaatagcacgatc |
39512453 |
T |
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| Q |
222 |
ttagtattat |
231 |
Q |
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| T |
39512454 |
tgagtattat |
39512463 |
T |
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