View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_12 (Length: 239)
Name: NF8870_low_12
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 7471806 - 7472020
Alignment:
| Q |
11 |
gattatactaaagtagaaataattcgattaacttcttatagcaagacaaacatagtagtaactcagagcttggtttagttgtaaagaaagatgtctttga |
110 |
Q |
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| T |
7471806 |
gattataataaagtagaaataattcgattaacttcttatagcaagtcaaacatagtagtaactcgtagcttggtttagtcgtaaagaaagatgtctttga |
7471905 |
T |
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| Q |
111 |
tccaaatgttcctgatacgagttcaaatattttcctgtatt----gagataaatgtaaatcattttgtaagttttctttgaggccgaatgacttctttgt |
206 |
Q |
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| T |
7471906 |
tccaaatgttcctgatacgagttcaaatatgttcctgtatgtatagagataaatgtaaatcattttgtaagttttctttgaggccgaatgacttctttat |
7472005 |
T |
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| Q |
207 |
cttaactaagacacc |
221 |
Q |
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| T |
7472006 |
cttaactaagacacc |
7472020 |
T |
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