View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_2 (Length: 482)
Name: NF8870_low_2
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 32693657 - 32693194
Alignment:
| Q |
1 |
ttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggtatgggtcttcaaacttgttctgatgctagtacttatgtt |
100 |
Q |
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| T |
32693657 |
ttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggtatgggtcttcaaacttgttctgatgctagtacttatgtt |
32693558 |
T |
|
| Q |
101 |
gggatgtttaaacatggtgttaaacatggtcttggttgttaccattttaggtaactattctataatctatatttcatttgaattgtttcattcttagann |
200 |
Q |
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| T |
32693557 |
gggatgtttaaacatggtgttaaacatggtcttggttgttaccattttaggtaactattctataatctatatttcatttgaattgtttcattcttagatt |
32693458 |
T |
|
| Q |
201 |
nnnnnnnnatgttatgttatgtgtgtgatttagtcttgttcaattgatggtactgttttataggcttctagttttaattgagatgttttgttttatgtga |
300 |
Q |
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| T |
32693457 |
tttttt--atgttatgttatgtgtgtgatttagtcttgttcaattgatggtactgttttataggcttctagttttaattgagatgttttgttttatgtga |
32693360 |
T |
|
| Q |
301 |
ggatatataacgcatttttggtatcacggtcaagtttgtcaaaatcagaatcaaggtgacctgattctgacaaacctagcgtgataccgaatatgaacat |
400 |
Q |
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| T |
32693359 |
ggatatataacgcatttttggtaccatggtcaagtttgtcaaaatcagaatcaaggtgacctgattctgacaaacctagcgtgataccgaatatgaacat |
32693260 |
T |
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| Q |
401 |
agtctaatagatggttttggatttagttgtgaaacatgtttttctaagttatggtatgtttttggt |
466 |
Q |
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| T |
32693259 |
agtctaatagatggttttggatgtagttgtgaaacatgtttttctaagttatggtatgtttttggt |
32693194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24238923 - 24238772
Alignment:
| Q |
1 |
ttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggtatgggtcttcaaacttgttctgatgctagtacttatgtt |
100 |
Q |
| |
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|||||| || ||||||||||||| || |||||| ||||||| |||||| || ||||||||| | ||| ||||| |||||||||||| ||| ||||||| |
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| T |
24238923 |
ttatagattttatactggtgattgttattctggggaatggtttaatggacagagtcatggttttggtgttcaatcttgttctgatgggagttgttatgtt |
24238824 |
T |
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| Q |
101 |
gggatgtttaaacatggtgttaaacatggtcttggttgttaccattttaggt |
152 |
Q |
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|| ||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
24238823 |
ggtgaatttaagtttggttctaaacatggtcttggttcttaccattttaggt |
24238772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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