View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_3 (Length: 381)
Name: NF8870_low_3
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 165 - 373
Target Start/End: Original strand, 49161877 - 49162110
Alignment:
| Q |
165 |
ttctctataaatatgttcacaagaacctcaatccattacaagaagtcggtcaatgttttgaagcaaaatacaaccagcactgctctacacttattagagt |
264 |
Q |
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| T |
49161877 |
ttctctataaatatgttcacaagaacctcaatccattataagaagtcagtcaaggttttgaagcaaagtacaaccagcactgctctacacttattagagt |
49161976 |
T |
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| Q |
265 |
tgatcgaactaacaatacaatcaaattcaaat-------------cactcttttgaagccacgctcccaaacaaatttcaa------------tccccaa |
339 |
Q |
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| T |
49161977 |
tgatctaactaacaatacaatcaaactcaaatcaacatgaagctccactcttttgaagccacgctcccaaacaaacttcaatccttcaaagactccccaa |
49162076 |
T |
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| Q |
340 |
agttccaccacaaatgcactacaacaccatactc |
373 |
Q |
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| T |
49162077 |
agttccactacaaatgcattacaacaccatactc |
49162110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 49160084 - 49160183
Alignment:
| Q |
65 |
ctagacttgttgattgactatagatacgaacattcatctctggtaacttttgtccatgttgcctataaaggaaaagctcactttcaaaagtttggttact |
164 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
49160084 |
ctagacttgttgattgactatatatacgaacattcatctctggtaacttttgtccatgttgcctataaaggaaaagctcactgttaaaagtttggttact |
49160183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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