View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_4 (Length: 341)
Name: NF8870_low_4
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 13870501 - 13870200
Alignment:
| Q |
19 |
aggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttaccgtggatgacaacactctcgccgttaaggatgctc |
118 |
Q |
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| T |
13870501 |
aggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttactgtggatgacaacactctcaccgttaaggatgctc |
13870402 |
T |
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| Q |
119 |
ttcctggccggaatcagttcaatgcaacaattaacttaactgggaagtaggctattggtctttggtttgacgaagaaaactctttgtgtgggaaaccatt |
218 |
Q |
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| T |
13870401 |
ttcctggccggaatcagttcaatggaacaatcaacttaactgggaagtaggctatttgtctttggtttgacgaagaaaactc--tgtgtgggaaaccatt |
13870304 |
T |
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| Q |
219 |
ttgtgcaatagtcttttggaggtaattaggaattggagaagagtgggaggagaggataggtggtggtggaagtcggaggagacaggtagttttatggtga |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13870303 |
ttgtgcaatagtcttttggaggtaattgggaattggagaagagtgggaggagaggataggtggtggtggaagtcggaggagacaggtagttttatggtga |
13870204 |
T |
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| Q |
319 |
gttc |
322 |
Q |
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|||| |
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| T |
13870203 |
gttc |
13870200 |
T |
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