View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_6 (Length: 312)
Name: NF8870_low_6
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_6 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 28468740 - 28468448
Alignment:
| Q |
5 |
agtatggtggtgttgactcaagacgttggagtatactcctactcaagttctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagcttcc |
104 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||| |||| |
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| T |
28468740 |
agtatggtggtgttgattcaagacgttggagtatactcctactcaaggtttcatgtttgattctcctcgatgtcaatttgagtaggttaatttaacttct |
28468641 |
T |
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| Q |
105 |
tnnnnnnngaacttgcctataaagtccccttaattctagcaaaccatgcatatggactcctttgaagggatttactatgtatgcaaaaatggttaaattt |
204 |
Q |
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| T |
28468640 |
tagaaaaagaacttgcctataaagtccccttaattctagcaaaccatgcatatggactcctttgaagggatttactatatatgcaaaaatggttaaattt |
28468541 |
T |
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| Q |
205 |
agagtaaaccatcattttgagtataacaattcggaacccggaatttacgaaatataaaattgctccctcaaattgtccaacgtccaaaatact |
297 |
Q |
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| T |
28468540 |
agaataaaccatcattttgagtataacaattcggaacccggaatttacgaaatataaaattgctccctcaaattgtccaacgtccaaaatact |
28468448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 36428751 - 36428804
Alignment:
| Q |
30 |
ttggagtatactcctactcaagttctcatgtttgattctcctcggtgtcaattt |
83 |
Q |
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| T |
36428751 |
ttggagtatgctcctcctcaaggtctcatgtttgattctccccggtgccaattt |
36428804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 19016080 - 19016143
Alignment:
| Q |
40 |
ctcctactcaagttctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
19016080 |
ctcctcctcgaggtctcaagtttgattctccccggtgccaatttaagtaggctaatttagcttc |
19016143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 21563294 - 21563344
Alignment:
| Q |
53 |
tctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
21563294 |
tctcatgattgattctcctcggtgctaatttaagtgagttaatttagcttc |
21563344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 35203397 - 35203347
Alignment:
| Q |
53 |
tctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
35203397 |
tctcatgttcgattatctttggtgtcaatttaagtgggttaatttagcttc |
35203347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 41504940 - 41504900
Alignment:
| Q |
63 |
gattctcctcggtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
41504940 |
gattctctccggtgtcaatttaagtgggttaatttagcttc |
41504900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 15814 - 15741
Alignment:
| Q |
30 |
ttggagtatactcctactcaagttctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
15814 |
ttggagtatgctcctcctcaaggtctcaagtttgattctccgcggtgccaatttgggtgggctaatttagcttc |
15741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 28783109 - 28783172
Alignment:
| Q |
40 |
ctcctactcaagttctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
28783109 |
ctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaatttagcttc |
28783172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 29538618 - 29538559
Alignment:
| Q |
11 |
gtggtgttgactcaagacgttggagtatactcctactcaagttctcatgtttgattctcc |
70 |
Q |
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| T |
29538618 |
gtggtgttgacttgagacattggagtatactccttctcaaggtctcaagttcgattctcc |
29538559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 34830322 - 34830276
Alignment:
| Q |
38 |
tactcctactcaagttctcatgtttgattctcctcggtgtcaattta |
84 |
Q |
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| T |
34830322 |
tactcctgctcaagttctcatattcgattctcctcagtgtcaattta |
34830276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 15601260 - 15601309
Alignment:
| Q |
53 |
tctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagctt |
102 |
Q |
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| T |
15601260 |
tctcatgtgtgattcttcctgatgtcaatttaagtaggttaatttagctt |
15601309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 24907506 - 24907600
Alignment:
| Q |
8 |
atggtggtgttgactcaagacgttggagtatactcctactcaagttctcatgtttgattctcctcggtgtcaatttaagtaggttaatttagctt |
102 |
Q |
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| T |
24907506 |
atggtggtattgaattgagacattggagtatgctcctcctcaagttctcaggttcgattatccttgatgccaatttaggtgggctaatttagctt |
24907600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 11090158 - 11090129
Alignment:
| Q |
74 |
gtgtcaatttaagtaggttaatttagcttc |
103 |
Q |
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| T |
11090158 |
gtgtcaatttaagtaggttaatttagcttc |
11090129 |
T |
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