View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8870_low_7 (Length: 303)
Name: NF8870_low_7
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 25103038 - 25102769
Alignment:
| Q |
18 |
cttttcttatctcccacattaccccctggatcctcattcaggcatatacacacaaacaaaaggaaaataatggatggtcaagagtgaagacaacaaaaca |
117 |
Q |
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| T |
25103038 |
cttttcttatctcccacattaccccctggatcctcattcaggcatatacacacaaacaaaaggaaaataatggatggtcaagagtgaagacaacaaaaca |
25102939 |
T |
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| Q |
118 |
atctcaacactataaagactataatggaattcacacacaagaaacaatgacaaaaatgaagagcaaaaatgccaaccttttggaacaaatttcatcagtg |
217 |
Q |
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| T |
25102938 |
atctcaacactataaagactataatggaattcacacacaagaaacaatgacaaaaatgaagagcaaaaatgccaaccttttggaacaaatttcatcagtg |
25102839 |
T |
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| Q |
218 |
ctgaaaccagaagtgaaatattcccaatgagcccctaaatagttcccaccgatgatctcagcaccattca |
287 |
Q |
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| T |
25102838 |
ctgaaaccagaagtgaaatcttcccaatgagcccctaaatagttcccaccgatgctctcagctccattca |
25102769 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 769065 - 768976
Alignment:
| Q |
18 |
cttttcttatctcccacattaccccctggatcctcattcaggcatataca--cacaaacaaaaggaaaataatggatggtcaagagtgaag |
106 |
Q |
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| T |
769065 |
cttttcttatctccctcactaccct-tggatcctctatcaagcatatatatacacaaacaaaagaaaactaatggatgctcaagagtgaag |
768976 |
T |
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