View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8870_low_9 (Length: 248)
Name: NF8870_low_9
Description: NF8870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8870_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32679791 - 32680027
Alignment:
| Q |
1 |
catatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32679791 |
catatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttatatacaagtagtgcagcgag |
32679890 |
T |
|
| Q |
101 |
ttgcctttggtaatgatcaaactcctcatcttcatacaaactctcgctgttaaacacacacatacaaaacacgcatgtttaatcttcaacattcccattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679891 |
ttgcctttggtaatgatcaaactcctcgtcttcatacaaactctcgctgttaa--acacacatacaaaacacgcatgtttaatcttcaacattcccattc |
32679988 |
T |
|
| Q |
201 |
tggcagttcacactaaaaaactaatacaaccaagtaaca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679989 |
tggcagttcacactaaaaaactaatacaaccaagtaaca |
32680027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 44806728 - 44806585
Alignment:
| Q |
7 |
tgcaaaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcct |
106 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||| | | |||||| ||||||||| ||| || |||||||| |
|
|
| T |
44806728 |
tgcaaaaacagcatcgcacagttatcaatagaacatgtgacaattcaaataatgagcagaat-acactacctttgatacaagtaatgcggcaagttgcct |
44806630 |
T |
|
| Q |
107 |
ttggtaatgatcaaactcctcatcttcatacaaactctcgctgtt |
151 |
Q |
| |
|
||| | |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
44806629 |
ttgatgctgatcaaactcctcatcttcgtacaaactctcactgtt |
44806585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 28136109 - 28136291
Alignment:
| Q |
1 |
catatatgcaaaaat-agcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcga |
99 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || | |
|
|
| T |
28136109 |
catatatgcaaaaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaa |
28136208 |
T |
|
| Q |
100 |
gttgcctttggtaatgatcaaactcctcatcttcatacaaactctcgctgttaaacacacacatacaaaacacgcatgtttaa |
182 |
Q |
| |
|
|||||||||||| |||||||| |||| ||||| ||||||||||| || || |||||| ||||||||| ||| ||||||||| |
|
|
| T |
28136209 |
gttgcctttggtgctgatcaaaggcctcctcttcgtacaaactctcactatttaacacatacatacaaaccacacatgtttaa |
28136291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2230496 - 2230444
Alignment:
| Q |
1 |
catatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
53 |
Q |
| |
|
|||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
2230496 |
catatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University