View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8871_low_1 (Length: 709)
Name: NF8871_low_1
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 608; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 19 - 693
Target Start/End: Original strand, 3342902 - 3343569
Alignment:
| Q |
19 |
agtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttatcttatatcattccctcttcttttatttgactta |
118 |
Q |
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| T |
3342902 |
agtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttat-----atcattccctcttcttttatttgactta |
3342996 |
T |
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| Q |
119 |
aat---gtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaagatttgct |
215 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3342997 |
aattatgtatccaagccggactttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacattaagatttgct |
3343096 |
T |
|
| Q |
216 |
acaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccaccaattctg |
315 |
Q |
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| T |
3343097 |
acaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccaccaattctg |
3343196 |
T |
|
| Q |
316 |
tattagagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcacataatcc |
415 |
Q |
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| T |
3343197 |
tattggagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcacataatcc |
3343296 |
T |
|
| Q |
416 |
atcagttagaacaagttcaagaaactctttcttctttttctcgaccatttttctcacaaaaccaattgaatcttcaatatcaaattcagggttgtctatc |
515 |
Q |
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| T |
3343297 |
atcagttagaacaagttcaagaaactctttcttctttttctcgaccatttttctcacaaaagcaattgaatcttcaatatcaaattcagggttgtctatc |
3343396 |
T |
|
| Q |
516 |
aagttgaccaaaacagaattcaatttcccttcttccttttccttctgcagaaccacataccaagttaaaattaaataatatgagcaagtgaaaatggagc |
615 |
Q |
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| T |
3343397 |
aagttgaccaaaacagaattcaatttcccttcttccttttccttctgcagaaccacataccaagtta-----aaataatatgagcaagtgaaaatggagc |
3343491 |
T |
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| Q |
616 |
accaatactacaattaactaatttacctgataactctccacgtcgtttaataaacggcaaatgaccattagtagtttt |
693 |
Q |
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| T |
3343492 |
accaatactacaattaactaatttacctgataactctccacgtcgtttaataaacggcaaatgaccattagtagtttt |
3343569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 110 - 573
Target Start/End: Original strand, 3367479 - 3367942
Alignment:
| Q |
110 |
tttgacttaaatgtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaaga |
209 |
Q |
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| T |
3367479 |
tttgatttaaatgaatccaagcccaactttaggtgtcatgaacctcattctggtgaaacctatcttactattatgtttgaatgggaagttattatggatt |
3367578 |
T |
|
| Q |
210 |
tttgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccacca |
309 |
Q |
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| T |
3367579 |
attgatatagtatgtttcttctttgggaatgtttgaggtgaaaaacactttgtagttctacccaaaggaagatatattgctttgtttatatcttcaacca |
3367678 |
T |
|
| Q |
310 |
attctgtattagagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcaca |
409 |
Q |
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| T |
3367679 |
aatctgtattagaatcaaatctatttttggagttgtaaaacatctcaaaaactttcaagcatgcgagatgaagttgtttgctaggtttaggtaaatcaca |
3367778 |
T |
|
| Q |
410 |
taatccatcagttagaacaagttcaagaaactctttcttctttttctcgaccatttttctcacaaaaccaattgaatcttcaatatcaaattcagggttg |
509 |
Q |
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| T |
3367779 |
caatccatcaattagaacaagttcaaggagctctttcttctttttctcaactatttctctcacaaagttaattgaatcttcaatattaaattcagggttc |
3367878 |
T |
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| Q |
510 |
tctatcaagttgaccaaaacagaattcaatttcccttcttccttttccttctgcagaaccacat |
573 |
Q |
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|| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3367879 |
tccatcatgtttatcaaaacagaattcaatttcccttcttccttttccttctgcagaacaacat |
3367942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 693
Target Start/End: Original strand, 3368368 - 3368425
Alignment:
| Q |
636 |
atttacctgataactctccacgtcgtttaataaacggcaaatgaccattagtagtttt |
693 |
Q |
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|||||||||||||||| | || || ||||||||||| ||||||| ||||||||||||| |
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| T |
3368368 |
atttacctgataactcacaacatcatttaataaacgacaaatgatcattagtagtttt |
3368425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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