View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8871_low_10 (Length: 291)
Name: NF8871_low_10
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_10 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 3672 - 3925
Alignment:
| Q |
21 |
gagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccaca |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3672 |
gagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccaca |
3771 |
T |
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| Q |
121 |
gccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgatgaaga |
220 |
Q |
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| T |
3772 |
gccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgttgaaga |
3871 |
T |
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| Q |
221 |
gttgtgtcatgttcatgcatggtttctataattcctttttcaaggggtctcttt |
274 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3872 |
gttgtgtcatgttcatgcatgatttctataattcctttttcaaggggtctcttt |
3925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 31319998 - 31319745
Alignment:
| Q |
21 |
gagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccaca |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31319998 |
gagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccaca |
31319899 |
T |
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| Q |
121 |
gccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgatgaaga |
220 |
Q |
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| T |
31319898 |
gccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgttgaaga |
31319799 |
T |
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| Q |
221 |
gttgtgtcatgttcatgcatggtttctataattcctttttcaaggggtctcttt |
274 |
Q |
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| T |
31319798 |
gttgtgtcatgttcatgcatgatttctataattcctttttcaaggggtctcttt |
31319745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 31332251 - 31331998
Alignment:
| Q |
21 |
gagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccaca |
120 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31332251 |
gagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccaca |
31332152 |
T |
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| Q |
121 |
gccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgatgaaga |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31332151 |
gccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagatagagattgttgaaga |
31332052 |
T |
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| Q |
221 |
gttgtgtcatgttcatgcatggtttctataattcctttttcaaggggtctcttt |
274 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31332051 |
gttgtgtcatgttcatgcatgatttctataattcctttttcaaggggtctcttt |
31331998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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