View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8871_low_13 (Length: 238)
Name: NF8871_low_13
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 10480085 - 10480236
Alignment:
| Q |
71 |
ccaatttatgatctgcaatattgtaatttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggt |
170 |
Q |
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| T |
10480085 |
ccaaattatgatatgtaatattgtaatttcagctcaaagttttggactcccttatctaagtgcatatcttgattcattggggaccaatttttcacatggt |
10480184 |
T |
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| Q |
171 |
gcaaactttgcaacaacagcatcaacaattagacccccaccaagtattatac |
222 |
Q |
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| T |
10480185 |
gcaaactttgcaacaacatcatcaacaattagacccccaccaagtattatac |
10480236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 10546793 - 10546689
Alignment:
| Q |
95 |
aatttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggtgcaaactttgcaacaacagcatca |
194 |
Q |
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| T |
10546793 |
aatttcagctgatagttttggactcccatttctaagtgcatatcttgattctttgggggctaactactcacatggaggaaactttgcaacggcatcatca |
10546694 |
T |
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| Q |
195 |
acaat |
199 |
Q |
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||||| |
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| T |
10546693 |
acaat |
10546689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 10499455 - 10499558
Alignment:
| Q |
96 |
atttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggtgcaaactttgcaacaacagcatcaa |
195 |
Q |
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| T |
10499455 |
atttcagcacaaagctttggacttccctatctaagtccatatcttaattctctggggtcaaatttcacacatggtgcaaactttgcaacagcagggtcaa |
10499554 |
T |
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| Q |
196 |
caat |
199 |
Q |
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|||| |
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| T |
10499555 |
caat |
10499558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10479974 - 10480050
Alignment:
| Q |
1 |
tccgaattatatgcctcttgcaacaatttattttaat----ttaattctaattctaaataaaaggttttacattccaa |
74 |
Q |
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| T |
10479974 |
tccgaattgtatgcctcttgtagcaatttattctaatcaatttaattctaattctaaataaaagg-tttacattccaa |
10480050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 10502390 - 10502498
Alignment:
| Q |
91 |
ttgtaatttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggtgcaaactttgcaacaacagc |
190 |
Q |
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| T |
10502390 |
ttgtaatttcagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcaacaggagg |
10502489 |
T |
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| Q |
191 |
atcaacaat |
199 |
Q |
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| T |
10502490 |
atcaacaat |
10502498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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