View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8871_low_2 (Length: 583)
Name: NF8871_low_2
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_2 |
 | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0128 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 42 - 566
Target Start/End: Complemental strand, 7328651 - 7328130
Alignment:
| Q |
42 |
tcgtgcttcatagagtatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328651 |
tcgtgcttcatagagtatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagca |
7328552 |
T |
|
| Q |
142 |
aatactcacacatttgaaacgaaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactt |
241 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7328551 |
aatactcacacat---aaacgaaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttactttcagcaggttgaaaccagactt |
7328455 |
T |
|
| Q |
242 |
tcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgta |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7328454 |
tcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtactctattagttctcaagttatagagaattgcttggttatgca |
7328355 |
T |
|
| Q |
342 |
ggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaag |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328354 |
ggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaag |
7328255 |
T |
|
| Q |
442 |
gttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaa |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328254 |
gttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaa |
7328155 |
T |
|
| Q |
542 |
aagcataaggagttcatcaacacac |
566 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7328154 |
aagcataaggagttcatcaacacac |
7328130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 57 - 566
Target Start/End: Original strand, 7310817 - 7311328
Alignment:
| Q |
57 |
tatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagcaaatactcacacattt |
156 |
Q |
| |
|
|||||||| | ||||||||||| |||| ||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||| ||| | |
|
|
| T |
7310817 |
tatatatatataactgagttctaaacaggtattcggatccttcggttgattcaccata-ctacgacaaagttttaaagtaaaggaaataatcatacaatc |
7310915 |
T |
|
| Q |
157 |
gaaacgaaggcaaaactaa---gtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatcc |
253 |
Q |
| |
|
||||| || |||| || ||||||||| |||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
7310916 |
gaaacctagtaaaaaaaaacaagtacataaactgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatcc |
7311015 |
T |
|
| Q |
254 |
ttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcga |
353 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
7311016 |
ttgatagagaaccaacatatctttttgttaactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttccga |
7311115 |
T |
|
| Q |
354 |
atacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagct |
453 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
7311116 |
atactattgtatcaccatcttcagaaagatgcaacggctttaatttcaacctcgagtaaacaactcttgaatttaaattcattcgaagattgtgatagct |
7311215 |
T |
|
| Q |
454 |
aaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggag |
553 |
Q |
| |
|
||||||||| || | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
7311216 |
aaatgtaaataactgagtccaagaccggtcgtctccaaattctgtcatcttccatataacaaaatctgttccgttgaaatcttgagaaaagcagaaggag |
7311315 |
T |
|
| Q |
554 |
ttcatcaacacac |
566 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7311316 |
ttcatcaacacac |
7311328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 57 - 393
Target Start/End: Original strand, 7306267 - 7306603
Alignment:
| Q |
57 |
tatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagcaaatactcacacattt |
156 |
Q |
| |
|
|||||||||| ||| ||||||| || | ||||||||||| || | ||||||||||||||||||| ||||||| |||||||||| ||||| || |||| || |
|
|
| T |
7306267 |
tatatatagataacggagttctaaaaaggtattcggatccgttgattgattcaccatatctatggcaaagttttaaagtaaaggaaataatcgcacaatt |
7306366 |
T |
|
| Q |
157 |
gaaacgaaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttg |
256 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
7306367 |
gaaaccaagtaaaaaccaagtacataaattgaaataaatattatgttggagaaaaacctacgttcaataggttgagaccagactttcgacataatccttg |
7306466 |
T |
|
| Q |
257 |
atagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaata |
356 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
7306467 |
atagagaaccaacatatctttttgttgactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttgcgaata |
7306566 |
T |
|
| Q |
357 |
cgattgtatcaccatcttcagaaagatgcaatgcctt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7306567 |
cgattgtatcaccatcttcagaaagatgcaatgcctt |
7306603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 443 - 566
Target Start/End: Original strand, 35205919 - 35206042
Alignment:
| Q |
443 |
ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaa |
542 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |
|
|
| T |
35205919 |
ttgtgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaa |
35206018 |
T |
|
| Q |
543 |
agcataaggagttcatcaacacac |
566 |
Q |
| |
|
| || ||||||||| ||| ||||| |
|
|
| T |
35206019 |
aacaaaaggagttcctcagcacac |
35206042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 205 - 402
Target Start/End: Original strand, 35205658 - 35205863
Alignment:
| Q |
205 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
304 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| ||||| |||| |
|
|
| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtactcta |
35205757 |
T |
|
| Q |
305 |
ttagttctcaagttatagag-----aattgcttggttatgtaggcagct---tgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaa |
396 |
Q |
| |
|
|| |||||| |||||||||| |||| |||||| | |||| | | ||||||||||| |||||||||||| |||||||||||||||| | |||| |
|
|
| T |
35205758 |
ttggttctccagttatagagaatataattacttggtgttttaggttgtttgctgcgaatacgagtgtatcaccatcctcagaaagatgcaatggcattaa |
35205857 |
T |
|
| Q |
397 |
tttcaa |
402 |
Q |
| |
|
| |||| |
|
|
| T |
35205858 |
tatcaa |
35205863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 443 - 565
Target Start/End: Original strand, 21210476 - 21210598
Alignment:
| Q |
443 |
ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaa |
542 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
21210476 |
ttgtgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaatcatgataaa |
21210575 |
T |
|
| Q |
543 |
agcataaggagttcatcaacaca |
565 |
Q |
| |
|
||||||| ||||| | |||||| |
|
|
| T |
21210576 |
ggcataagaagttcctaaacaca |
21210598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 227 - 389
Target Start/End: Complemental strand, 20415161 - 20414999
Alignment:
| Q |
227 |
gttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaa |
326 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| | || ||||||||||| | || || || | ||||| ||||| | |||||||||| |
|
|
| T |
20415161 |
gttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaattatagagaa |
20415062 |
T |
|
| Q |
327 |
ttgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatg |
389 |
Q |
| |
|
||||| ||| ||||||| | |||||||||| | ||||||||||| || |||||||||||| |
|
|
| T |
20415061 |
ttgctcggtcttgtaggctgtttgcgaatacaagtgtatcaccatttttgaaaagatgcaatg |
20414999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 402
Target Start/End: Original strand, 21210247 - 21210420
Alignment:
| Q |
228 |
ttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaat |
327 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||||| |||||| | ||||| | | |||| ||||| | ||||| |||| |||||||| |||| |
|
|
| T |
21210247 |
ttgaaaccagactt-cgacataatcctcggtacagaaccaacgtatcttatggttaattttggatttcagtactgtattatttctgaagttatatagaac |
21210345 |
T |
|
| Q |
328 |
tgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaa |
402 |
Q |
| |
|
||||||||| || ||| | || ||||||| ||||||||| || |||||||||||||| | |||||||||||| |
|
|
| T |
21210346 |
tgcttggttttgcaggttgtttacgaatactattgtatcaatattttcagaaagatgcaccggctttaatttcaa |
21210420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 449 - 566
Target Start/End: Original strand, 21218709 - 21218826
Alignment:
| Q |
449 |
tagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcata |
548 |
Q |
| |
|
||||||||| | | ||||| |||||||||| | |||||||||||||| ||||| | ||||||||| ||||| ||| |||||||| ||| |||| || | |
|
|
| T |
21218709 |
tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaacaaa |
21218808 |
T |
|
| Q |
549 |
aggagttcatcaacacac |
566 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21218809 |
aggagttcatcaacacac |
21218826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7328718 - 7328675
Alignment:
| Q |
1 |
tttagtgtaattatatgtgtcggtctcgtgtcgtgttggtgtcg |
44 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7328718 |
tttagtgtaattatatgtgtcggtgtcgtgtcgtgttggtgtcg |
7328675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 13888093 - 13888164
Alignment:
| Q |
447 |
gatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaat |
518 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||| | || |||||||||| |||||| |||||||||||||||| |
|
|
| T |
13888093 |
gatagctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaat |
13888164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 429 - 519
Target Start/End: Complemental strand, 20414971 - 20414881
Alignment:
| Q |
429 |
aattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatc |
519 |
Q |
| |
|
|||||||| ||||||| | || | ||||| ||| ||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
20414971 |
aattcactcgaaggttatcattgttaaatttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataataaaatc |
20414881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 546
Target Start/End: Complemental strand, 36260285 - 36260225
Alignment:
| Q |
486 |
ctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca |
546 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||| |||||| ||||||||| |
|
|
| T |
36260285 |
ctccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaagca |
36260225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 20456552 - 20456505
Alignment:
| Q |
471 |
tccaagacctgtcatctccaaattctgtcatcttccatataacaaaat |
518 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
20456552 |
tccaagacttgtcatccccaaattttgtcatcttccatataacaaaat |
20456505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 546
Target Start/End: Complemental strand, 36263123 - 36263025
Alignment:
| Q |
448 |
atagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca |
546 |
Q |
| |
|
|||||||| | ||| || || |||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| || | |||| ||||||||| |
|
|
| T |
36263123 |
atagctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaagca |
36263025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 35205498 - 35205575
Alignment:
| Q |
64 |
agagaactgagttctgaacacg-tattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagc |
140 |
Q |
| |
|
||||||||||||||| |||| | |||| |||| | ||||||||| | |||||||||||||||||| | ||||||||| |
|
|
| T |
35205498 |
agagaactgagttctaaacatggtatttggatgggccggttgatttagcatatctatgacaaagttttgaagtaaagc |
35205575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 21218469 - 21218553
Alignment:
| Q |
206 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctag |
290 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| | || ||| |||||| |||||||||||||| ||||| |
|
|
| T |
21218469 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctag |
21218553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 205 - 330
Target Start/End: Original strand, 31442749 - 31442874
Alignment:
| Q |
205 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
304 |
Q |
| |
|
||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||| || || || |||| |
|
|
| T |
31442749 |
gagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactcta |
31442848 |
T |
|
| Q |
305 |
ttagttctcaagttatagagaattgc |
330 |
Q |
| |
|
||| ||||| | |||||||||||||| |
|
|
| T |
31442849 |
ttatttctccaattatagagaattgc |
31442874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 31443005 - 31443061
Alignment:
| Q |
482 |
tcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga |
538 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |||| || ||||||||| |
|
|
| T |
31443005 |
tcatctccaaattttgtcatcttccatataacgaaatcggtttcattcaaatcatga |
31443061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 431 - 517
Target Start/End: Complemental strand, 24292 - 24206
Alignment:
| Q |
431 |
ttcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaa |
517 |
Q |
| |
|
|||| |||||| | ||||||||||||| ||| ||||| ||| |||||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24292 |
ttcatttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaa |
24206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 336
Target Start/End: Complemental strand, 24491 - 24360
Alignment:
| Q |
205 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
304 |
Q |
| |
|
||||| ||||||| ||| || |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||| |||| || || || |||| |
|
|
| T |
24491 |
gagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactactcta |
24392 |
T |
|
| Q |
305 |
ttagttctcaagttatagagaattgcttggtt |
336 |
Q |
| |
|
||| || || | ||||||||||||||| |||| |
|
|
| T |
24391 |
ttatttatccaattatagagaattgctcggtt |
24360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 538
Target Start/End: Complemental strand, 4192 - 4117
Alignment:
| Q |
463 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga |
538 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||| || || |||||||||||| |
|
|
| T |
4192 |
gaattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggtcttcttgaaatcatga |
4117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 566
Target Start/End: Complemental strand, 25690 - 25570
Alignment:
| Q |
446 |
tgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagc |
545 |
Q |
| |
|
|||||| ||||| ||| ||||| |||||||| | ||| ||||||||| ||| ||||||||||||||||| |||| || ||||| ||| ||| | |
|
|
| T |
25690 |
tgataggtaaatttaaggaattgggtccaagaatttacatttccaaattccatcaatttccatataacaaaatcagtttcctttaaatcgtgataaacac |
25591 |
T |
|
| Q |
546 |
ataaggagttcatcaacacac |
566 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
25590 |
atagggagttcatcaacacac |
25570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 538
Target Start/End: Complemental strand, 42298166 - 42298091
Alignment:
| Q |
463 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga |
538 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| |||||||||||||||| ||||| || || ||||||| |||| |
|
|
| T |
42298166 |
gaattgagtccaagaattttcatctccaaattctatcatcttccatataactaaatcagtattcttgaaattatga |
42298091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 42298420 - 42298342
Alignment:
| Q |
206 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaa |
284 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| || || ||| |||||||||||||| |||||| |
|
|
| T |
42298420 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaa |
42298342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 34451061 - 34451021
Alignment:
| Q |
4 |
agtgtaattatatgtgtcggtctcgtgtcgtgttggtgtcg |
44 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
34451061 |
agtgtaattatatgtgtcggtgtcgtgtcgtgtcggtgtcg |
34451021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 20980669 - 20980603
Alignment:
| Q |
453 |
taaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatc |
519 |
Q |
| |
|
||||| ||| ||| |||||||||||| ||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
20980669 |
taaatttaaggaacttagtccaagactcttcaactctaaattctgtcattttccatataacaaaatc |
20980603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30527622 - 30527590
Alignment:
| Q |
1 |
tttagtgtaattatatgtgtcggtctcgtgtcg |
33 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
30527622 |
tttagtgtaattatatgtgtcggtatcgtgtcg |
30527590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34785009 - 34784977
Alignment:
| Q |
1 |
tttagtgtaattatatgtgtcggtctcgtgtcg |
33 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
34785009 |
tttagtgtaattatatgtgtcggtgtcgtgtcg |
34784977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University