View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8871_low_3 (Length: 426)
Name: NF8871_low_3
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 19641351 - 19640954
Alignment:
| Q |
18 |
gatttatcataatgggcaaccttttttgttctgagtataccatacatagacgctttgatttgaagggttcttcacttgggcgcataacgactaaacctga |
117 |
Q |
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| T |
19641351 |
gatttatcataatgggcaaccttttttgttctgagtataccatacatagacgctttgatttgaagggttcttcacttgggcgcataacgactaagcctga |
19641252 |
T |
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| Q |
118 |
gtcagagattactgaaaccaccatccttaaagatcttgatctaaattttatatttcgactacaacgatcttggtttttagaattttgcaggtgataaaag |
217 |
Q |
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| T |
19641251 |
gtcagagattactgaaaccaccatcctaaaagatcttgatctaaattttatatttcgactacaacgatcttggtttttagaattttgcaggtgataaaag |
19641152 |
T |
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| Q |
218 |
ttaaatatatgatagcaaattttaacgtgacctatctagctatcatataacagatttctatttttaccttctcgaaaagaataagcaattgaagcaattc |
317 |
Q |
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| T |
19641151 |
ttaaatatattatagcaaattttaacatgacctagctagctatcatataacaaatttctatttttaccttctcgaaaagaataagaaattgaaccatgtc |
19641052 |
T |
|
| Q |
318 |
gtgtgtttgttatatacgatcacaggcaaatcgaccgggactgtgagcttctggaacaggagggaattatggactatagtctactagttggcattcat |
415 |
Q |
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| T |
19641051 |
atgtgtttgttatatatgatcacaggcaaatcgaccgggactgtgagcttctggaacaggagggaattatggactatagtctactagttggcattcat |
19640954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 35258639 - 35258841
Alignment:
| Q |
17 |
agatttatcataatgggcaaccttttttgttctgagtataccatacatagacgctttgatttgaagggttcttcacttgggcgcataacgactaaacctg |
116 |
Q |
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||||||||||||||||| ||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||| |||| | | ||| | || |
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| T |
35258639 |
agatttatcataatgggaaacctcttttgttctgagtatatcacgcatagacgctatgatttgaagggttcttcacttggtcgcacatctgataagcttg |
35258738 |
T |
|
| Q |
117 |
agtcagagattactgaaaccaccatccttaaagatcttgatctaaattttatatttcgactacaacgatcttggtttttagaattttgcaggtgataaaa |
216 |
Q |
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|| |||||||| ||||||||| || |||||||||||||| || ||||||||||||| ||| || |||||||||| ||| |||||||||||||| || |
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| T |
35258739 |
agatagagattagtgaaaccactattcttaaagatcttgaccttaattttatatttctacttcagaaatcttggtttgaagagttttgcaggtgatataa |
35258838 |
T |
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| Q |
217 |
gtt |
219 |
Q |
| |
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||| |
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| T |
35258839 |
gtt |
35258841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 35259167 - 35259223
Alignment:
| Q |
359 |
tgtgagcttctggaacaggagggaattatggactatagtctactagttggcattcat |
415 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
35259167 |
tgtgagcttctagaacaagagggaattatggactatagtctgctacttggcattcat |
35259223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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