View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8871_low_4 (Length: 381)
Name: NF8871_low_4
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 33115488 - 33115382
Alignment:
| Q |
181 |
aaacaaaaatcatgatctaatataatagttttcataccttagtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgtt |
280 |
Q |
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| T |
33115488 |
aaacaaaaatcatgatctaatataatagttttcataccttagtgaaggccaagttgatgagataggagagaaattgtcccccagtgatgagaaaaccgtt |
33115389 |
T |
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| Q |
281 |
gagactt |
287 |
Q |
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||||||| |
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| T |
33115388 |
gagactt |
33115382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 33114957 - 33114876
Alignment:
| Q |
285 |
cttacaagggcacctctcactttagcaggcgaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
366 |
Q |
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| T |
33114957 |
cttacaagggcacctctcactttagcaggcgaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
33114876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 33115549 - 33115489
Alignment:
| Q |
88 |
atgattaacttattttctttttacaaggcacaaacaacatgatttcgatataaggagaaag |
148 |
Q |
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| T |
33115549 |
atgattaacttattttctttttacaaggcacaaacaacatgatttcgatataaggagaaag |
33115489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33115606 - 33115546
Alignment:
| Q |
1 |
tatttgaaaattttataattatgtcgatcattttaaagcttcatcaataaaagtgtcatga |
61 |
Q |
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| T |
33115606 |
tatttgaaaattttataattatgtcaatcattttaaagcttcatcaataaaagtgtcatga |
33115546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 216 - 366
Target Start/End: Original strand, 21493229 - 21493379
Alignment:
| Q |
216 |
accttagtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagacttacaagggcacctctcactttagcaggcg |
315 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| ||| || || | |
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| T |
21493229 |
accttagtaaaggccaagttgatgagataggaaaggaactgtccaccagtgatgagaaaactgttgagactaacaagagcacctctaactcgagttggtg |
21493328 |
T |
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| Q |
316 |
aagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
366 |
Q |
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|||| || || ||||||| ||||| |||||||||||||| || ||||||| |
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| T |
21493329 |
aagcctcagagatgtacaaaggagatgccattgaagccatcccgacaccaa |
21493379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 366
Target Start/End: Original strand, 21560409 - 21560553
Alignment:
| Q |
222 |
gtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagacttacaagggcacctctcactttagcaggcgaagctt |
321 |
Q |
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||||| ||||||||||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||||| || ||||| || ||| || ||||||| |
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| T |
21560409 |
gtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaagctt |
21560508 |
T |
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| Q |
322 |
ctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
366 |
Q |
| |
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|||| || || | ||||||||||||||||||||||||||||||| |
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| T |
21560509 |
ctgagatatataaaggagaagccattgaagccattccaacaccaa |
21560553 |
T |
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