View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8871_low_5 (Length: 367)
Name: NF8871_low_5
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 7810354 - 7810692
Alignment:
| Q |
11 |
gtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctgaagttcctaacaaggaatcaatctatgaagtaaatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810354 |
gtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctgaagttcctaacaaggaatcaatctatgaagtaaatg |
7810453 |
T |
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| Q |
111 |
gtagtccaattacaaagcacaaagggttcttagtgttcaaattcaaggattttaactgtaccatagaatactatagagctccatttcttgtgttacaaag |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810454 |
gtagtccaattacaaagcacaaagggttcttggtgttcaaattcaaggattttaactgtaccatagaatactatagagctccatttcttgtgttacaaag |
7810553 |
T |
|
| Q |
211 |
cagacctcctaaaggaagtgctaaaaagattaggacaaccataaaactggatcaaatggattggaactcttggaaatggagagatgctgatgttttggtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810554 |
cagacctcctaaaggaagtgctaaaaagattaggacaaccataaaactggatcaaatggattggaactcttggaaatggagagatgctgatgttttggtt |
7810653 |
T |
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| Q |
311 |
cttaacacaggacattggtggaataatgagaaaaccatc |
349 |
Q |
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| T |
7810654 |
cttaacacaggacattggtggaataatgagaaaaccatc |
7810692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 7820330 - 7820668
Alignment:
| Q |
11 |
gtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctgaagttcctaacaaggaatcaatctatgaagtaaatg |
110 |
Q |
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||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7820330 |
gtgtttgttggagactcaattggaagaaaccaatgggagtcactactgtgcatgctctcttctgaagttcctaacaaggaatcaatttatgaagtaaatg |
7820429 |
T |
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| Q |
111 |
gtagtccaattacaaagcacaaagggttcttagtgttcaaattcaaggattttaactgtaccatagaatactatagagctccatttcttgtgttacaaag |
210 |
Q |
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|||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
7820430 |
gtagcccaattacaaagcatgaagggttcttggtgttcaaattcaaggattttaactgtacaatagagtactatagagctccatttcttgtgttgcaaag |
7820529 |
T |
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| Q |
211 |
cagacctcctaaaggaagtgctaaaaagattaggacaaccataaaactggatcaaatggattggaactcttggaaatggagagatgctgatgttttggtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7820530 |
cagacctcctaaaggaagtgctaaaaagattaggacaaccataaaactggatcaaatggattggaactcttggaaatggaaagatgctgatgttttggtt |
7820629 |
T |
|
| Q |
311 |
cttaacacaggacattggtggaataatgagaaaaccatc |
349 |
Q |
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| T |
7820630 |
cttaacacaggacatttgtggaataatgagaaaatcatc |
7820668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 37802008 - 37802120
Alignment:
| Q |
29 |
attggaagaaaccaatgggaatcactactatgcatgctctcttctgaagttcctaacaaggaatcaatctatgaagtaaatggtagtccaattacaaagc |
128 |
Q |
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|||||||| ||||||||||||||||| || || ||||| ||||||| ||| | |||||| || ||||||| || ||||| | ||||||||||||| |
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| T |
37802008 |
attggaaggaaccaatgggaatcacttctctgtatgctatcttctgccgttacaaacaagagttctgtctatgaggttaatgggaacccaattacaaagc |
37802107 |
T |
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| Q |
129 |
acaaagggttctt |
141 |
Q |
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||| ||| ||||| |
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| T |
37802108 |
acacaggcttctt |
37802120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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