View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8871_low_8 (Length: 319)
Name: NF8871_low_8
Description: NF8871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8871_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 2933991 - 2934267
Alignment:
| Q |
19 |
atcagtcattcgtattggtactttgtagttttcggctacacaaataatgcgttaagcatcttctctctgagcttgggtctgagattgctgtgatatgttt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2933991 |
atcagtcattcgtattggtactttgtagtttttggctacacagataatgcgttaagcatcttctctctgagcttggctctgagattgctgtgatatgttt |
2934090 |
T |
|
| Q |
119 |
ctgtattagttcctattttcagtaattaataatactctgattttcttagcttgagtggtctctataacaccaatacaaatataagg-ctattcccactat |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2934091 |
ctgtattagttcctattttcagtaattaataatactctgattttcttagcttgagtggtctctataacaccaatacaaatataaggactattcccactat |
2934190 |
T |
|
| Q |
218 |
gaaacgttggagattattgctattacgataatgtttttctgtgaagattcatgttgcttcactatggtatctgtgct |
294 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2934191 |
gaaatgttggagattattgctattacgataatgtttttctgtgaagattcatgttgcttcactatggtatctgtgct |
2934267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 1894825 - 1894547
Alignment:
| Q |
19 |
atcagtcattcgtattggtactttgtagttttcggctacacaaataatgcgttaagcatcttctctctgagcttgggtctgagattgctgtgatatgttt |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1894825 |
atcagtcattcgtattggtactttgtagttttcggccacacagataatgcgttaagcatcttctctctgagcttgggtctgagattgttgtgatatgttt |
1894726 |
T |
|
| Q |
119 |
ctgtattagttcctattttcagtaattaataata--ctctgattttcttagcttgagtggtctctataacaccaatacaaatataagg-ctattcccact |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
1894725 |
ctgtattagttcctattttcagtaattaataatactctctgattttcttagcttgagtggtctctataacaccactacaaatataaggactattcccact |
1894626 |
T |
|
| Q |
216 |
atgaaacgttggagattattgctattacgataatgtttttctgtgaagattcatgttgcttcactatggtatctgtgct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1894625 |
atgaaacgttggagattattgctattacgataatgtttttctgtgaagattcatgttgcttcactatggtatctgtgct |
1894547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 1904271 - 1903993
Alignment:
| Q |
19 |
atcagtcattcgtattggtactttgtagttttcggctacacaaataatgcgttaagcatcttctctctgagcttgggtctgagattgctgtgatatgttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1904271 |
atcagtcattcgtattggtactttgtagttttcggccacacagataatgcgttaagcatcttctctctgagcttgggtctgagattgttgtgatatgttt |
1904172 |
T |
|
| Q |
119 |
ctgtattagttcctattttcagtaattaataata--ctctgattttcttagcttgagtggtctctataacaccaatacaaatataagg-ctattcccact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
1904171 |
ctgtattagttcctattttcagtaattaataatactctctgattttcttagcttgagtggtctctataacaccactacaaatataaggactattcccact |
1904072 |
T |
|
| Q |
216 |
atgaaacgttggagattattgctattacgataatgtttttctgtgaagattcatgttgcttcactatggtatctgtgct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1904071 |
atgaaacgttggagattattgctattacgataatgtttttctgtgaagattcatgttgcttcactatggtatctgtgct |
1903993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 1901660 - 1901395
Alignment:
| Q |
19 |
atcagtcattcgtattgg-tactttgtagttttcggctacacaaataatgcgttaagcatcttctctctgagcttgggtctgagattgctgtgatatgtt |
117 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||| |||||| || || ||||||||| |
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| T |
1901660 |
atcagttatttgtattgggtactttgtagttttcggctacacagataatgctttaagca---tctctctgagtttggctctgaggttactatgatatgtt |
1901564 |
T |
|
| Q |
118 |
tctgtattagttcctattttcagtaattaataata--ctctgattttcttagcttgagtggtctctataacaccaatacaaatataagg-ctattcccac |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||| |||| |||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
1901563 |
tctgtattagttccta---tcagtaattaataatactctctgattttcttaccttgggtggtctc--taacaccagtacaaatataaggactattcccac |
1901469 |
T |
|
| Q |
215 |
tatgaaacgttggagattattgctattacgataatg-tttttctgtgaagattcatgttgcttcactatggtatctg |
290 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
1901468 |
-atgaaacgttg--gattattgctatcatgataatgttttttctgtgaagattcatgttgtttcactatggtatctg |
1901395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 1911106 - 1910841
Alignment:
| Q |
19 |
atcagtcattcgtattgg-tactttgtagttttcggctacacaaataatgcgttaagcatcttctctctgagcttgggtctgagattgctgtgatatgtt |
117 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||| |||||| || || ||||||||| |
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| T |
1911106 |
atcagttatttgtattgggtactttgtagttttcggctacacagataatgctttaagca---tctctctgagtttggctctgaggttactatgatatgtt |
1911010 |
T |
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| Q |
118 |
tctgtattagttcctattttcagtaattaataata--ctctgattttcttagcttgagtggtctctataacaccaatacaaatataagg-ctattcccac |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||| |||| |||||||| |||||||| ||||||||||||| |||||||||| |
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|
| T |
1911009 |
tctgtattagttccta---tcagtaattaataatactctctgattttcttaccttgggtggtctc--taacaccagtacaaatataaggactattcccac |
1910915 |
T |
|
| Q |
215 |
tatgaaacgttggagattattgctattacgataatg-tttttctgtgaagattcatgttgcttcactatggtatctg |
290 |
Q |
| |
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||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1910914 |
-atgaaacgttg--gattattgctatcatgataatgttttttctgtgaagattcatgttgtttcactatggtatctg |
1910841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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