View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8872_high_2 (Length: 384)
Name: NF8872_high_2
Description: NF8872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8872_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 41094884 - 41094537
Alignment:
| Q |
16 |
cacaaattgagttcaatttgatcctctaaaagacacaccagaaatctttatacaaataactaatcgtttctgactcattataacaaaaggactactttgt |
115 |
Q |
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| T |
41094884 |
cacaaattgagttcaatttgatcctccaaaagacacaccataaatctttatacaaataactaatcgtt-----------ataacaaaaggactactttgt |
41094796 |
T |
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| Q |
116 |
catcaatataaaaatgtcagggactagtttgagtattgtttttgtcaagtactaaattagaccacgcgaaaattataagggactnnnnnnntgaattttc |
215 |
Q |
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| T |
41094795 |
catcaatataaaaatgtcagggactagtttgagtattgtttttgtcaagtactaaattagaccacgcgaaaattataagggactaaaaaaatgaattttc |
41094696 |
T |
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| Q |
216 |
tgattgtgtgaaatagttttgtcgaaacttctactcagattgtattatttagatgtttgtgtaatatttcaaaaaacaatactataaactgatttactca |
315 |
Q |
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| T |
41094695 |
agattgtgtgaaatagttttgtcgaaacttctactcagattgtattatttagatgtttgtgtaatatttcaaaaaacaatactataaactgatttactca |
41094596 |
T |
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| Q |
316 |
ttgagtgcatgataaaaattgtaatacaaaataatacaagcttccatttcccataacac |
374 |
Q |
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| T |
41094595 |
ttgagtgcatgataaaaattgtaatacaaaataatacaagcttccatttcccataacac |
41094537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 31317903 - 31317846
Alignment:
| Q |
89 |
ctcattataacaaaaggactactttgtcatcaatataaaaatgtcagggactagtttg |
146 |
Q |
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| T |
31317903 |
ctcattataacaaaaggactaatttgtccccatttttaaaatgtcagggactagtttg |
31317846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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