View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8872_high_5 (Length: 250)
Name: NF8872_high_5
Description: NF8872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8872_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 52968679 - 52968429
Alignment:
| Q |
4 |
actttggtgttgattcgttcgtcgtaatgcttactgtttttatgggaatagaatagaatataaacagtgattaattaattaat----ggtttctctaccc |
99 |
Q |
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| T |
52968679 |
actttggtgttgattcgttcgtcgtaatgcttactgtttttatgggaatagaatagaatataaacagtgattaattaattaattaatggtttctctaccc |
52968580 |
T |
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| Q |
100 |
catttttctgatatgtcagtttcttcaatcagaatttgttcccacacatctcacagattctgattacattttgacttcattattggttttttgatttggt |
199 |
Q |
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| T |
52968579 |
catttttctgatatgtcagtttcttcaatcagaatttgttcccacacatctcacagattctgattacattttgacttcattattggttttttgatttggt |
52968480 |
T |
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| Q |
200 |
gctttgcgtcgtaagtactgtaaacgtgtcaatcatactcaaataatagta |
250 |
Q |
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| T |
52968479 |
gctttgcatcgtaagtactgtaaacgtgtcaatcatactcaaataatagta |
52968429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 52962880 - 52962734
Alignment:
| Q |
46 |
tgggaatagaatagaatataaa-cagtgattaattaattaatggtttctctaccccatttttctgatatgtcagtttcttcaatcagaatttgttcccac |
144 |
Q |
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| T |
52962880 |
tgggaatagaatagagtataaaacaaacagtaatcaattaatggtatccctaccccattcttctgatatggcaatgtcttcaatcaaaatttgttctcac |
52962781 |
T |
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| Q |
145 |
acatctca---cagattctgattacattttgacttcattattggttt |
188 |
Q |
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| T |
52962780 |
tcatctcaaaacagattctcattacattttgacttctttattggttt |
52962734 |
T |
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