View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8872_high_6 (Length: 219)
Name: NF8872_high_6
Description: NF8872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8872_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 5962379 - 5962573
Alignment:
| Q |
2 |
gaaacccctaaagatttgggtacaatatattatatcaaattaacctcaaagcagttcaatgtgcttgtttaatggggatatagcttagagtag---aaaa |
98 |
Q |
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| T |
5962379 |
gaaacccctaaagattggggtacaatatattatatcaaattaacctcaaagcagttcaatgtgcttgtttaatggggatatagcttagagtagataataa |
5962478 |
T |
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| Q |
99 |
taacaaattatcctatttattagcacaaaagg-ttttctttttctcgcaagttacaagttatacctaaccaggcactggtattgatcaattaattaac |
195 |
Q |
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| T |
5962479 |
taacaaattaacctattaattagcacaaaaggtttttctttttctcgcaagttacaagttataccgaaccaggcaccgg---tgatcaattaattaac |
5962573 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 30898049 - 30897944
Alignment:
| Q |
46 |
ctcaaagcagttcaatgtgcttgtttaatggggatatagcttagagtagaaaata--acaaattatcctatttattagcacaaaaggttttctttttctc |
143 |
Q |
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| T |
30898049 |
ctcaaagcagttcaacgtacttgtttaatggagataga--ttacagtagataatactaccaattaacctctttattagcacaaagggttttattttcctt |
30897952 |
T |
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| Q |
144 |
gcaagtta |
151 |
Q |
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| T |
30897951 |
gcaagtta |
30897944 |
T |
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