View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8872_low_1 (Length: 618)

Name: NF8872_low_1
Description: NF8872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8872_low_1
NF8872_low_1
[»] chr1 (1 HSPs)
chr1 (1-618)||(41988295-41988926)


Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 41988295 - 41988926
Alignment:
Q  1 tgactgccatatacgtaggaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactgga 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41988295 tgactgccatatacgtaagaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactgga 41988394  T
Q  101 atcttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgaaa-------------gatcgaaatcttgacaataacatgacattatcttagt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||||||||||||||||    
T  41988395 atcttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgagaaggtgtgttgaatgatcgaaatcttgacaataacatgacattatcttagt 41988494  T
Q  188 atgacactcttttttgtttattgtttt-tcttgacagctgtgatctctatagagcatgaaaagacattgtaacttcttactttgatttttgtatttcatt 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41988495 atgacactcttttttgtttattgttttttcttgacagctgtgatccctatagagcatgaaaagacattgtaacttcttactttgatttttgtatttcatt 41988594  T
Q  287 tgattgagtgaaagacattgtaactacatgagaaataagatcctactccggatcttcagaaattttgagtaatttcatgaccatgagtgaggaatgtaga 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  41988595 tgattgagtgaaagacattgtaactacatgagaaataagatcctactccggatcttcggaagttttgagtaatttcatgaccatgagtgaggaatgtaga 41988694  T
Q  387 caaattatttgtggccaagtgttgattagattaccaaatttatatttttctgaatggttaaggttactc-atgctattgctaactactagatttgaggca 485  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41988695 caaattatttgtggccaagtattgattagattacctaatttatatttttctgaatggttaaggttactcaatgctattgctaactactagatttgaggca 41988794  T
Q  486 ataattattcataaacgaccaacataaaaattgttgtcaatggtcacttcgattcttatgatcttatctgttttagtaccatatagaaagttttgataat 585  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41988795 ataattattcataaatgaccaacat-aaaattgttgtcaatggtcacttcgattcttatgatcttatctgttttagtaccatatagaaagttttgataat 41988893  T
Q  586 actaatttttcctgtttaaattttgcaccacgt 618  Q
    |||||||||||||||||||||||||||||||||    
T  41988894 actaatttttcctgtttaaattttgcaccacgt 41988926  T

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