View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8872_low_4 (Length: 316)

Name: NF8872_low_4
Description: NF8872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8872_low_4
NF8872_low_4
[»] chr6 (35 HSPs)
chr6 (19-304)||(26876573-26876858)
chr6 (212-283)||(26659009-26659080)
chr6 (212-283)||(26764980-26765051)
chr6 (207-301)||(26805538-26805632)
chr6 (207-301)||(26952621-26952715)
chr6 (207-299)||(26649490-26649585)
chr6 (207-299)||(26755458-26755553)
chr6 (207-308)||(26851537-26851638)
chr6 (216-301)||(26887808-26887893)
chr6 (212-301)||(27590184-27590273)
chr6 (212-284)||(28789399-28789471)
chr6 (207-293)||(26061590-26061674)
chr6 (207-293)||(26081560-26081644)
chr6 (212-298)||(27657795-27657882)
chr6 (193-287)||(26826911-26827005)
chr6 (207-301)||(27715550-27715644)
chr6 (212-301)||(31287600-31287692)
chr6 (212-288)||(26626158-26626237)
chr6 (212-288)||(26732135-26732214)
chr6 (212-288)||(25077042-25077118)
chr6 (212-292)||(26638429-26638512)
chr6 (212-292)||(26744395-26744478)
chr6 (207-299)||(27662422-27662517)
chr6 (212-301)||(27674613-27674702)
chr6 (212-252)||(27528711-27528751)
chr6 (212-284)||(28795423-28795495)
chr6 (192-287)||(25491184-25491279)
chr6 (209-252)||(27425029-27425072)
chr6 (213-310)||(26962105-26962202)
chr6 (212-301)||(27681973-27682062)
chr6 (212-283)||(28246414-28246485)
chr6 (212-301)||(27608165-27608257)
chr6 (212-293)||(28142674-28142755)
chr6 (248-292)||(26808488-26808532)
chr6 (223-283)||(28525284-28525344)
[»] chr4 (7 HSPs)
chr4 (207-301)||(18696500-18696594)
chr4 (189-301)||(18652551-18652669)
chr4 (189-301)||(18676633-18676751)
chr4 (209-252)||(18076483-18076526)
chr4 (207-283)||(18686694-18686770)
chr4 (207-283)||(18721165-18721241)
chr4 (207-301)||(18728590-18728690)
[»] chr1 (4 HSPs)
chr1 (212-301)||(265380-265469)
chr1 (207-299)||(28124681-28124773)
chr1 (193-283)||(26139022-26139112)
chr1 (201-299)||(28129706-28129804)
[»] scaffold0419 (1 HSPs)
scaffold0419 (212-284)||(10549-10621)
[»] scaffold0277 (2 HSPs)
scaffold0277 (212-284)||(1762-1834)
scaffold0277 (212-284)||(10728-10800)
[»] scaffold0349 (1 HSPs)
scaffold0349 (207-301)||(16301-16395)
[»] chr8 (1 HSPs)
chr8 (212-286)||(29270891-29270965)
[»] scaffold0003 (1 HSPs)
scaffold0003 (209-252)||(62291-62334)
[»] chr2 (1 HSPs)
chr2 (207-290)||(17990186-17990269)
[»] scaffold0038 (1 HSPs)
scaffold0038 (212-283)||(46576-46647)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 26876858 - 26876573
Alignment:
Q  19 agtttcccgggataatcttggctatatagtctaatattttcttccaatcccaaatcaaatagacatgtatgattcggttcaaagcggaaagggcaacaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876858 agtttcccgggataatcttggctatatagtctaatattttcttccaatctcaaatcaaatagacatgtatgattcggttcaaagcggaaagggcaacaac 26876759  T
Q  119 gcatcaaacaatattcacagccattgacaaacaaattgactcttacgctaatcacatcattacaaaatccaagaagaacaatagaacgtataaaagggat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876758 gcatcaaacaatattcacagccattgacaaacaaattgactcttacgttaatcacatcattacaaaatccaagaagaacaatagaacgtataaaagggat 26876659  T
Q  219 ctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876658 ctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaa 26876573  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 26659080 - 26659009
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||| ||||    
T  26659080 aagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26659009  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 26765051 - 26764980
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||| ||||    
T  26765051 aagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26764980  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 26805632 - 26805538
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  26805632 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 26805538  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 26952715 - 26952621
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    |||| ||||||||||| |||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||||||||||||||||  ||||||||    
T  26952715 tatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttggga 26952621  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 26649585 - 26649490
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgt---gatttggtgttggaaccagtctggaatcccctctgttccgtttgg 299  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |||| |   ||||||||||| |||||| ||||||||||||||| ||||||||||    
T  26649585 tatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttgg 26649490  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 26755553 - 26755458
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgt---gatttggtgttggaaccagtctggaatcccctctgttccgtttgg 299  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |||| |   ||||||||||| |||||| ||||||||||||||| ||||||||||    
T  26755553 tatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttgg 26755458  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 308
Target Start/End: Complemental strand, 26851638 - 26851537
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaata 306  Q
    |||| ||||||||||||||||||||||||| |||||||| | | || || ||||||| | |||||| ||||||||||| ||||||||| |||| | ||||    
T  26851638 tatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatcccttctgttccgcttggcaaaata 26851539  T
Q  307 at 308  Q
    ||    
T  26851538 at 26851537  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 26887893 - 26887808
Alignment:
Q  216 gatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    ||||| |||||||||||||||||||| ||| |||||| || ||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  26887893 gatctctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttggga 26887808  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 27590184 - 27590273
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    ||||||| | |||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  27590184 aagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 27590273  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 28789471 - 28789399
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 284  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  28789471 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28789399  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 26061674 - 26061590
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 293  Q
    |||| ||||||| | |||||||||||||||| |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||    
T  26061674 tatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctctgttcc 26061590  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 26081644 - 26081560
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 293  Q
    |||| ||||||| | |||||||||||||||| |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||    
T  26081644 tatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctctgttcc 26081560  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 27657795 - 27657882
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgt-cccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttg 298  Q
    |||||||||||||||||||||||||||||||||| | | ||| |||||||||| | | |||| ||||||||||||||| || ||||||    
T  27657795 aagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcccctcttttacgtttg 27657882  T

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Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 26827005 - 26826911
Alignment:
Q  193 agaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctc 287  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||| | |||  || ||||||| |  ||||  ||||||||||||||    
T  26827005 agaataatagaacgtatagaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccctc 26826911  T

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Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 27715550 - 27715644
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||| ||||||||||||||||    
T  27715550 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttggga 27715644  T

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Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 31287692 - 31287600
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    ||||||||||||||||||||||||||| |||||   |||||||| |||||||||| |  ||||| | ||||||||| |||||||| |||||||    
T  31287692 aagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatcccatctgttccatttggga 31287600  T

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Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 26626237 - 26626158
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctct 288  Q
    |||||||||||||||||||||||||||||||||   | |||||| ||||||| || | |||||| |||||||||||||||    
T  26626237 aagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctct 26626158  T

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Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 26732214 - 26732135
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctct 288  Q
    |||||||||||||||||||||||||||||||||   | |||||| ||||||| || | |||||| |||||||||||||||    
T  26732214 aagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctct 26732135  T

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Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 25077118 - 25077042
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctct 288  Q
    ||||||||||||| |||||||||||||||||||| | ||||   |||||||| | |||||| |||||||||||||||    
T  25077118 aagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccctct 25077042  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 26638512 - 26638429
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgt---ttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 292  Q
    ||||||||||||||||||||||||||||||||||    |||||| || |||| || | |||||| ||||||||| |||||||||    
T  26638512 aagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttc 26638429  T

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Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 26744478 - 26744395
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgt---ttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 292  Q
    ||||||||||||||||||||||||||||||||||    |||||| || |||| || | |||||| ||||||||| |||||||||    
T  26744478 aagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttc 26744395  T

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Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 299
Target Start/End: Original strand, 27662422 - 27662517
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 299  Q
    |||| |||||||||||||||  ||||||||||||||||   | |||||| ||| ||| || | |||||| ||||||||||||||||||||| ||||    
T  27662422 tatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctctgttccggttgg 27662517  T

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Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 27674613 - 27674702
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    ||||||| | |||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||| || |||||||||    
T  27674613 aagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctttttcgtttggga 27674702  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 27528711 - 27528751
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtccc 252  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27528711 aagggatctttttacgaaaccagaaagaaattgtgtgtccc 27528751  T

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Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 28795495 - 28795423
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 284  Q
    ||||||||||||||| ||||||||| |||||||| | |||| || ||||||| | |||||| |||||||||||    
T  28795495 aagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28795423  T

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Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 25491184 - 25491279
Alignment:
Q  192 aagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctc 287  Q
    |||||||||| ||| |||  ||||||| | ||||| ||||||||||||||||||  ||||| | |||||||| | |||||| |||||||| |||||    
T  25491184 aagaacaatacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattccctc 25491279  T

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Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 27425029 - 27425072
Alignment:
Q  209 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 252  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  27425029 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 27425072  T

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Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 26962202 - 26962105
Alignment:
Q  213 agggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaataatct 310  Q
    |||||||||||| ||| |||||||||||| ||| | |||| |  ||||||| |  ||||| ||||||||||||||  |||||||||||| | ||||||    
T  26962202 agggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccctcacttccgtttgggaaactaatct 26962105  T

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Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 27682062 - 27681973
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    ||||||| | |||||||||||||||||||||| |  ||||| || ||||||| |  ||||| ||||| ||||||||| |||| |||||||    
T  27682062 aagggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttggga 27681973  T

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Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 28246485 - 28246414
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  28246485 aagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

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Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 27608165 - 27608257
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc---ctctgttccgtttggga 301  Q
    ||||||| | |||||||||||||||||||| |||  ||||| || ||||||| |  ||||| ||||| |||||   |||||||||||||||||    
T  27608165 aagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccctgctctgttccgtttggga 27608257  T

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Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 28142755 - 28142674
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 293  Q
    |||||| ||||| |||||||||||||| ||||| | ||||| || ||||||| |  ||||| ||||||||||  ||||||||    
T  28142755 aagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcctttctgttcc 28142674  T

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Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 26808532 - 26808488
Alignment:
Q  248 gtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 292  Q
    ||||| |||||||||| | |||||| |||||||||||||||||||    
T  26808532 gtcccttgatttggtgctcgaaccaatctggaatcccctctgttc 26808488  T

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Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 28525344 - 28525284
Alignment:
Q  223 ttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  28525344 ttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatcc 28525284  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 18696500 - 18696594
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||||||||||||||||||||    
T  18696500 tatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttggga 18696594  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 18652551 - 18652669
Alignment:
Q  189 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctgg------aatc 282  Q
    ||||| || |||||||  |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| |||||      ||||    
T  18652551 aagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatc 18652650  T
Q  283 ccctctgttccgtttggga 301  Q
    |||||||||||||||||||    
T  18652651 ccctctgttccgtttggga 18652669  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 18676633 - 18676751
Alignment:
Q  189 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc----- 283  Q
    ||||| || |||||||  |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||         
T  18676633 aagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatc 18676732  T
Q  284 -cctctgttccgtttggga 301  Q
     ||||||||||||||||||    
T  18676733 tcctctgttccgtttggga 18676751  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 18076526 - 18076483
Alignment:
Q  209 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 252  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  18076526 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 18076483  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 18686694 - 18686770
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||| |||||||||||||||  |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||    
T  18686694 tatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 18721165 - 18721241
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||| |||||||||||||||  ||||||||||||||||  || ||| || ||||||| | |||||| ||||||||||    
T  18721165 tatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 18728590 - 18728690
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc------cctctgttccgtttggg 300  Q
    |||| |||||||||||||||  ||||||||||||||||  || ||| || |||| || | |||||| ||||||||||      |||||||||||||||||    
T  18728590 tatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttggg 18728689  T
Q  301 a 301  Q
    |    
T  18728690 a 18728690  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 265380 - 265469
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  265380 aagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 265469  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 299
Target Start/End: Original strand, 28124681 - 28124773
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 299  Q
    |||| ||||||| | ||||||||||||||||||||  || ||| ||  | |||||||||||||||| || ||||||||||| |||||| ||||    
T  28124681 tatagaagggatttctttacgaaaccagaaagaaacagtatgttcccagttttggtgttggaaccaatcaggaatcccctcagttccggttgg 28124773  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 26139112 - 26139022
Alignment:
Q  193 agaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||| |||||||| |||| ||||||| ||||||| |||||||||||||||||| || |||  |  |||||| | |||||| ||||||||||    
T  26139112 agaaaaatagaacttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaatcc 26139022  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 28129706 - 28129804
Alignment:
Q  201 agaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 299  Q
    ||||| |||| ||||||| | ||||||||||||||||||||  || ||||||  | ||||||||| ||| || || ||||||||||| |||||| ||||    
T  28129706 agaacttatagaagggatttctttacgaaaccagaaagaaacagtatgtccccagctttggtgttcgaaacaatcaggaatcccctcagttccggttgg 28129804  T

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Target: scaffold0419 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 10621 - 10549
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 284  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  10621 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10549  T

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Target: scaffold0277 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 1762 - 1834
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 284  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  1762 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 1834  T

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Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 10728 - 10800
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 284  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  10728 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10800  T

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Target: scaffold0349 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 16395 - 16301
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 301  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||| ||||||||||||||||    
T  16395 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttggga 16301  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 29270891 - 29270965
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccct 286  Q
    ||||||| | ||||||||||||||||||||||||  ||||| || ||||||||| |||||| ||||| |||||||    
T  29270891 aagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccct 29270965  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 62334 - 62291
Alignment:
Q  209 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 252  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  62334 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 62291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 17990186 - 17990269
Alignment:
Q  207 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgt 290  Q
    |||| ||||||| | |||||||||||||||||||||||| || ||| || ||||||| |  ||||| ||||||||||| |||||    
T  17990186 tatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcccttctgt 17990269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 46647 - 46576
Alignment:
Q  212 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 283  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  46647 aagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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