View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8872_low_7 (Length: 237)
Name: NF8872_low_7
Description: NF8872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8872_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41988917 - 41989137
Alignment:
| Q |
1 |
tgcaccacgttaaatgtattgatattctacctctctaaaatattaacattatgtttaagaatgtcatatttttcttgataaacaagtgaaaaaa-tggtt |
99 |
Q |
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| T |
41988917 |
tgcaccacgttaaatgtattgatattctacctctctaaaatattaacattatgtttaagaatgtcatatttttcttgataaacaagtgaaaaaaatggtt |
41989016 |
T |
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| Q |
100 |
gaaaaaagaggtgtgtatctgtcattaatttataagaatccgcacgaattagctgtgggtggaattccaaagttgcatatgtattgttatatatgtagta |
199 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41989017 |
gaaaaaagaggtgtgtatatgtcatt----tataagaatccgcacgaattagctgtgggtggaattccaaagttgcatatgtattgttatatatgtagta |
41989112 |
T |
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| Q |
200 |
cctgtggggaccttaggcaattgtt |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
41989113 |
cctgtggggaccttaggcaattgtt |
41989137 |
T |
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