View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_high_1 (Length: 718)
Name: NF8873_high_1
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 221 - 703
Target Start/End: Original strand, 1364142 - 1364632
Alignment:
| Q |
221 |
aggaaagcaaaaaagcgtccttagcatttattaaaggaagacaaattttagatggtattctggttgctaattaggtagttgatgaatctnnnnnnnnnnn |
320 |
Q |
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||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1364142 |
aggaaagcaaaaaagtgcccttagcatttattaaaggaatacaaattttagatggtattctggttgctaattaggtagttgatgaatctaaaaaattgaa |
1364241 |
T |
|
| Q |
321 |
nnnngaattgcttttatttaaagtcgactttaagaaggcatacaattcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgact |
420 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1364242 |
aaaagaattgcttttatttaaagtcgactttaagaaagcatacaattcagttgattggaaatatttggatgatattatggttacgatgttgtttccgact |
1364341 |
T |
|
| Q |
421 |
atttggaggaaatgaatgaaagaatgtgttgggactgctactgcggctgttttattgaatggtagtcccactgagaaatttactttagctagaggtctgc |
520 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1364342 |
atttggaggaaatgaatgaaaaaatgtgttgggactgctactgcgactgttttattgaatggtagtcccactgagaaattcactttagctagaggtctgc |
1364441 |
T |
|
| Q |
521 |
gacaaggagatcccctttc-cccttcttgttccttctggtggttga-ggatttcatgtgatgatggagtctattgttaatactaataatgtttttattga |
618 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
1364442 |
gacagggagatcccctttcacctttcttgttccttctggtggttgaggggtttcatgtgatgatggagtctattgttaatactaataatatttttagtga |
1364541 |
T |
|
| Q |
619 |
ttacaaagtaggggggtcggccattaactatttctaaccct-------ctgatgataactttgattttgagggaaagaagttgggctgatgt |
703 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1364542 |
ttacaaagta-gggggtcggccattaactatttataaccctcagtttacggatgataactttgattttgggggaaagaagttgggctaatgt |
1364632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 1363939 - 1364106
Alignment:
| Q |
44 |
ctatgattcatctccttcctagatgcttgcaagtattcttagttttaagttcgaattagaggatgtttggtttcttactaatccgcggtcaatgtttgaa |
143 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1363939 |
ctatgattcatctccttcatagatgcttgcaagtattcttagttttatgttcgaattaggggatgtttggtttcttactaatccgcggtcaatgtttgaa |
1364038 |
T |
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| Q |
144 |
tttctgtactaatacatccataaaaacttgatttattttgacatgtgcacaatagcaaaaaagtgtcc |
211 |
Q |
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| T |
1364039 |
tttctgtactaatacatccataaaaacttgatttgttttgacatgtggacaatagcaaaaaagtgtcc |
1364106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 375 - 482
Target Start/End: Complemental strand, 17952169 - 17952062
Alignment:
| Q |
375 |
ttggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgttgggactgctactgcggctgtttta |
474 |
Q |
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||||||||||||||||| |||||| | ||| ||| ||||||||| | ||||||||||||| ||||||||||||||||| || ||| ||||||| || || |
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| T |
17952169 |
ttggaaatatttggatggtgttataggtaaaatggtgtttccgaatctttggaggaaatggatgaaagaatgtgttggcacaactattgcggctattcta |
17952070 |
T |
|
| Q |
475 |
ttgaatgg |
482 |
Q |
| |
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||||||| |
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| T |
17952069 |
gtgaatgg |
17952062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 32808966 - 32808864
Alignment:
| Q |
353 |
agaaggcatacaattcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgttgg |
452 |
Q |
| |
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|||| |||||||| ||| ||||||||| |||||||||||||||||| | || ||| ||||||||| ||||| | || || || ||||||||| |||| |
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| T |
32808966 |
agaaagcatacaactcaattgattggagctatttggatgatgttatgttgaaaatggggtttccgacactttggcgtaagtggataaaagaatgtattgg |
32808867 |
T |
|
| Q |
453 |
gac |
455 |
Q |
| |
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||| |
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|
| T |
32808866 |
gac |
32808864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 471
Target Start/End: Original strand, 15106368 - 15106505
Alignment:
| Q |
334 |
ttatttaaagtcgactttaagaaggcatacaattcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaat |
433 |
Q |
| |
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|||||||| || |||||| | ||||||||| |||| || ||||| ||||| |||||||||| | ||| || ||| ||||||| | ||||||||||| |
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| T |
15106368 |
ttatttaaggttgactttgaaaaggcatacgattctgtagattgaaaatacttggatgatggtgtgggcaatatgccatttccgaatcattggaggaaat |
15106467 |
T |
|
| Q |
434 |
gaatgaaagaatgtgttgggactgctactgcggctgtt |
471 |
Q |
| |
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| ||||||||||||||||| || |||| |||||||||| |
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| T |
15106468 |
ggatgaaagaatgtgttggcacggctaatgcggctgtt |
15106505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 449
Target Start/End: Original strand, 20691162 - 20691226
Alignment:
| Q |
385 |
ttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgt |
449 |
Q |
| |
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|||||||| ||||||| ||| |||| |||| |||| ||||||||||||| |||||||||||||| |
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| T |
20691162 |
ttggatgacgttatgggtaaaatgtcatttctgactctttggaggaaatggatgaaagaatgtgt |
20691226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 21580552 - 21580459
Alignment:
| Q |
371 |
ttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgttgggactgctactgc |
464 |
Q |
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|||||||||| |||||||| || |||||| | |||||| |||||||||| | ||| | ||||| || || || ||||||||||||||| |||| |
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| T |
21580552 |
ttgattggaattatttggaggaagttatgatgaagatggggtttccgactttgtggcgcaaatggattaaggagtgtgttgggactgcttctgc |
21580459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 23877277 - 23877346
Alignment:
| Q |
365 |
attcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatg |
434 |
Q |
| |
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|||| ||||| |||||||||||||||||||| |||| || |||| ||||| ||| ||||||||||||| |
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| T |
23877277 |
attccgttgaatggaaatatttggatgatgtgatggagaaaatgtcttttcccactctttggaggaaatg |
23877346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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