View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_high_16 (Length: 244)
Name: NF8873_high_16
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51000876 - 51001099
Alignment:
| Q |
1 |
cgggattacaaaaactcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactggaaca |
100 |
Q |
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| T |
51000876 |
cgggattacaaaaactcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactgcaaca |
51000975 |
T |
|
| Q |
101 |
ctaccatcctacattgaacaatagaaccaataagttaggcaactcatgagaccaaagtaaaatgcaaactaagggagaaaaatggcaccagacaacatac |
200 |
Q |
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| T |
51000976 |
ctaccatcctacattgaacaatagaaccaataa--------------gagaccaaagtaaaatgcaaattaagggagaaaaatggcaccagacaacatac |
51001061 |
T |
|
| Q |
201 |
agatattaaaaacaggagactggaacctcactgttctt |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
51001062 |
agatattaaaaacaggagactggaacctcactgttctt |
51001099 |
T |
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