View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_high_2 (Length: 586)
Name: NF8873_high_2
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_high_2 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 6 - 571
Target Start/End: Original strand, 21045 - 21630
Alignment:
| Q |
6 |
gtttggtggttaggaaaagatgatatttttcttggcagaacaatcttgtcaccatttacccaagcgcccggtattgtgactatgattagggctggggtaa |
105 |
Q |
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| T |
21045 |
gtttggtggtcaggaaaagatgatatttttcttggcagaacaatcttgtcaccatttacccaagcgcccggtagtgtgactatgattagggctggggtaa |
21144 |
T |
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| Q |
106 |
cggtaccccccggtatcagtaacgacagtgatattgctatcggacttggtgctgaaagagatcgaggatcggtgcaaattggggtgattttgttggggta |
205 |
Q |
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| T |
21145 |
cggtaccccccggtatcagtaacgaccgtgatattgctatcggacttggtgctgagagagatcgaggatcggtgcaaattggggtgattttgttggggta |
21244 |
T |
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| Q |
206 |
tatggtgacggatagtgcttcagtatcaatgacgttcaagtttggcccaaatgctgtaaaatttccagctggtagcagaaatggtgcctggtcttgggcg |
305 |
Q |
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| T |
21245 |
tatggtgacggatagtgcttcagtatcaatgacgttcaagtttggcccaaatgctgtaaaatttccagctggtagcagaaatggtgcctggtcttgggcg |
21344 |
T |
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| Q |
306 |
attcctcgcccaatattgatgcataatttcatggtgtagtgttatctagtggcagggtgtatcatct---------------------ttgtttcatgaa |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21345 |
attcctcgcccaatattgatgcataatttcatggtgtagtgttatctagtggcagggtgtatcatctttgtaatcttttttgttcaccttgtttcatgaa |
21444 |
T |
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| Q |
385 |
ttaattaatataataaagttcgtattttgagttaaaatattggtgctcttattcactgtgttgcattgaagtttatttatttgatctgctatatatgcta |
484 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445 |
ttaattgatataataaagttcgtattttgagtt-aaatattggtgctcttattcgctgtgttgcattgaagtttatttatttgatctgctatatatgcta |
21543 |
T |
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| Q |
485 |
tgttcaatggagacttaattggcttataaatcatagcatatgcaaatcaattttaatcgatctcttctggcaattatggtgattaat |
571 |
Q |
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| T |
21544 |
tgttcaatggagacttaattggcttataaatcatagcatatgcaaatcaattttaatcgatctcttctggcaattatggtgattaat |
21630 |
T |
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