View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_high_3 (Length: 521)
Name: NF8873_high_3
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_high_3 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 39 - 353
Target Start/End: Original strand, 16832485 - 16832798
Alignment:
| Q |
39 |
ctattgtacttcaaaactgatcaactatgtaaaga--taaataatctgcctaaactgcagttcagattgagaaacctctgatcatgggcacatagtgaag |
136 |
Q |
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| T |
16832485 |
ctattgtacttcaagacttatcaaccatgtaaagagataaataatctgcctaaactgcagttcagattgagaaacctctgatcatgggcacatagtgaag |
16832584 |
T |
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| Q |
137 |
aagatgatcgacgaaaacgccaaaagccttggaagaacgagaaaatgaaaacgggagaaggttagggccagggtcacgtgcaaacttaaatgaattaatg |
236 |
Q |
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| T |
16832585 |
aaggtgatcgacgaaaatgccaaaagcctttgaagaacgagaaaatgaagacgggttaaggttagggccagggtcacctgcaaactgaaatgaattaatg |
16832684 |
T |
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| Q |
237 |
cgagtctttgattatgcattatgcttatagtacttgggcaatactcaactaaaatacatataacaacaaaagtttgaatgtgattagaataaagaggaaa |
336 |
Q |
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| T |
16832685 |
cgagtctttgattatgcattatgcttatagtacttgggaaatactcaactaaaatacatat---aacaaaagtttttatgtgattagaataaaaaggaaa |
16832781 |
T |
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| Q |
337 |
agccaaaacctctagaa |
353 |
Q |
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| T |
16832782 |
agccaaaacccctagaa |
16832798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 16873852 - 16873797
Alignment:
| Q |
48 |
ttcaaaactgatcaactatgtaaagataaataatctgcctaaactgcagttcagat |
103 |
Q |
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| T |
16873852 |
ttcaaaactgatcaaccatgtaaagagaaataatgtgcctaaactgcacttcagat |
16873797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 16571897 - 16571842
Alignment:
| Q |
48 |
ttcaaaactgatcaactatgtaaagataaataatctgcctaaactgcagttcagat |
103 |
Q |
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| T |
16571897 |
ttcaaaactgataaaccatgtaaagagaaataatgtgcctaatctgcagttcagat |
16571842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 16573400 - 16573347
Alignment:
| Q |
248 |
ttatgcattatgcttatagtacttgggcaatactcaact-aaaatacatataacaa |
302 |
Q |
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| T |
16573400 |
ttatgcattgtgctta--gtacttgggaaatactcaactgaaaatacatataacaa |
16573347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 11866 - 11921
Alignment:
| Q |
48 |
ttcaaaactgatcaactatgtaaagataaataatctgcctaaactgcagttcagat |
103 |
Q |
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| T |
11866 |
ttcaaaactgatcaaccgtgtaaagagtaataatgtgcctaaactgcaattcagat |
11921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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