View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_high_6 (Length: 406)
Name: NF8873_high_6
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 39 - 267
Target Start/End: Complemental strand, 27034098 - 27033865
Alignment:
| Q |
39 |
tcaatgtgaagctccttcacagcttctgaatttgggtaacaatttaaacgaactataaaagactgattaactaaatgttcattaggta---atcctatac |
135 |
Q |
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| T |
27034098 |
tcaatgtgaagctcctctatagcgtctgaatttgggtaacaatttaaacgagctataaaagacaga-taactaaatgttcattaagtattcctcctatac |
27034000 |
T |
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| Q |
136 |
acacataaatcctcacnnnnnnnctatatacacttaaatagagag---gnnnnnnngagtatattatataccttgtcaattgcaaatgcaaactgtttgt |
232 |
Q |
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|||||||||||||| | |||||||||||||||||||||| || ||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
27033999 |
acacataaatcctctcaaaaaaactatatacacttaaatagagagagaaaaaaaaagataatattatatacattgtcgattgcaaatgcatactgtttgt |
27033900 |
T |
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| Q |
233 |
ggaaataattgtacaaggataaaatgaagtactat |
267 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
27033899 |
ggaaataattgtacaaggataagatgaagtactat |
27033865 |
T |
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