View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8873_high_7 (Length: 404)

Name: NF8873_high_7
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8873_high_7
NF8873_high_7
[»] chr1 (1 HSPs)
chr1 (1-388)||(42187859-42188246)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-379)||(340832-341208)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 42188246 - 42187859
Alignment:
Q  1 caatgtacaaagaatggcctttctttcaaagtacaatagaccttattgagatggttttaggtaaagcagacactactatagctaagtactatgatgaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42188246 caatgtacaaagaatggcctttctttcaaagtacaatagaccttattgaaatggttttaggtaaagcagacactactatagctaagtactatgatgaagc 42188147  T
Q  101 ccttgtgtcagaggagaggcaggaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaactt 200  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42188146 ccttgtatcagaggagaggcaagaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaactt 42188047  T
Q  201 cagcagaataataggagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42188046 cagcagaataataggagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggc 42187947  T
Q  301 gtgatgacgacaaccttaaactcagagatgctttgcttatcactgtaaacgggattgctgctgggatgaggaataccggttaatgctg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  42187946 gtgatgacgacaaccttaaactcagagatgctttgcttatcactgtaaatgggattgctgctgggatgaggaataccggttaacgctg 42187859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 379
Target Start/End: Original strand, 340832 - 341208
Alignment:
Q  3 atgtacaaagaatggcctttctttcaaagtacaatagaccttattgagatggttttaggtaaagcagacactactatagctaagtactatgatgaagccc 102  Q
    ||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| || ||||| |||| | |||| || ||| | |||||||| || |    
T  340832 atgtacaaagagtggcctttctttcaaagcataatagacctgattgagatggttttgggaaaagccgacatttctattgcaaagcagtatgatgaggcac 340931  T
Q  103 ttgtgtcagaggagaggcaggaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaacttca 202  Q
    |||| |||||| |||| || ||||| ||| || ||||||| ||||||||| | ||| |||| ||||||||    || ||| |||||||||| |||||||     
T  340932 ttgtttcagagaagagacaagaacttggttgtcagctaaggaacgagctcattacaactgagaagtttgtaacagttatttgtgggcacgacaaacttct 341031  T
Q  203 gcagaataataggagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggcgt 302  Q
    |||||||||||||   ||||||| |||| |||| || |||||||| |||||||| ||| ||||| |||||||||| ||||| || |||||||| || |||    
T  341032 gcagaataatagggcattgaggaagttgattgaaaatagacttccttttctcaaccccttgaacatgttgcaggtagagatacttaagaggttaagacgt 341131  T
Q  303 gatgacgacaaccttaaactcagagatgctttgcttatcactgtaaacgggattgctgctgggatgaggaataccgg 379  Q
    |||||||| || ||||||   ||||||| | | ||||||||  | || || |||||||| ||||||||||| |||||    
T  341132 gatgacgataaacttaaagcaagagatgttctccttatcaccattaatggtattgctgccgggatgaggaacaccgg 341208  T

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