View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_high_8 (Length: 377)
Name: NF8873_high_8
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 45531479 - 45531136
Alignment:
| Q |
17 |
aaccacagattaacaacaactcttaactctttctcaattctcaatactttccctccttgtttaaagtaacttcgcaaacatttacacaatacacattaca |
116 |
Q |
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| T |
45531479 |
aaccacagattaacaacaactcttaactctttctcaattctcaatactttccttccttgtttaaagtaacttcgcaaacatttacacaatacacattaca |
45531380 |
T |
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| Q |
117 |
tcttcatcttcatcttcttctccgcatattctgcattggtggcgcgtggttttgaagcgatggcgagagtagtgaaggaaccagaggaagtgatgagaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45531379 |
tcttcatcttcatcttcttctccgcatattctgcattggtggcgcgtggttttgaagcgatggcgagagtagtgaaggaaccagaggaagtgatgagaat |
45531280 |
T |
|
| Q |
217 |
gcgaggaggttcagtgcttggaaagaagacaattctgaagagtgaccattttcctggttgtcaaaataaacgtctttctcctcagatcgaaggtgctcct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45531279 |
gcgaggaggttcagtgcttggaaagaagacaattctgaagagtgaccattttcctggttgtcaaaataaacgtctttctcctcagatcgaaggtgctcct |
45531180 |
T |
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| Q |
317 |
aattatcgtcgtgctgactctttgcatgttcatggtgttgctat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45531179 |
aattatcgtcgtgctgactctttgcatgttcatggtgttgctat |
45531136 |
T |
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