View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8873_low_11 (Length: 349)

Name: NF8873_low_11
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8873_low_11
NF8873_low_11
[»] scaffold0140 (1 HSPs)
scaffold0140 (18-279)||(35508-35774)
[»] chr1 (2 HSPs)
chr1 (28-209)||(52947383-52947565)
chr1 (223-267)||(46604670-46604714)
[»] chr5 (1 HSPs)
chr5 (18-267)||(42775446-42775697)
[»] scaffold0524 (1 HSPs)
scaffold0524 (90-267)||(8851-9029)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-159)||(10337-10479)
[»] chr3 (2 HSPs)
chr3 (18-155)||(45981433-45981571)
chr3 (18-66)||(8391427-8391476)
[»] chr7 (1 HSPs)
chr7 (18-66)||(28848584-28848632)
[»] chr4 (1 HSPs)
chr4 (135-267)||(5236379-5236512)
[»] chr2 (1 HSPs)
chr2 (219-267)||(28563604-28563652)


Alignment Details
Target: scaffold0140 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 35508 - 35774
Alignment:
Q  18 aatttcacgtatttttgcaattcgtccttgtatc---ttttttgtttcaaaactctccttgtaag-cttttttcgttttgcaaatggtccttcccattaa 113  Q
    |||||| || ||||||||||||||||| |||||    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  35508 aatttcgcgcatttttgcaattcgtccctgtattcttttttttgtttcaaaactctccttgtaagtcttttttcgttttgcaaatggtcattcccgttaa 35607  T
Q  114 ctcccattacaaaaatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagtggct 213  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| |||||||    
T  35608 ctcccgttacaaaaacggcgaggtggcagacggagacacacgtggcttacggtgacttggcaaaaggagggttacgtgtcaaaagagctgggtagtggct 35707  T
Q  214 agattcagggaccaaaacgaaaaacgaaagagtgcaaagggatgaaatt-aaaaagtcttaaatatc 279  Q
    ||||| |||||| | || ||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  35708 agattgagggactacaaagaaaaacgaaaaagtgcaaagggatgaaattaaaaaagtcataaatatc 35774  T

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Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 52947383 - 52947565
Alignment:
Q  28 atttttgcaattcgtccttgtatctttt-ttgtttcaaaactctccttgtaagcttttttcgttttgcaaatggtccttcccattaactcccattacaaa 126  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||    
T  52947383 atttttgcaattcgtccatgtatctttttttgtttcaaaactctccttgtaagcttttttcgttttgcaaatgattcttcccgttaactcccgttacaaa 52947482  T
Q  127 aatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagt 209  Q
    || ||| ||||||||| |||||||| |||||||||| |||||| || ||||||||| ||||||||||||||||||||| ||||    
T  52947483 aacggcgaggtggcaggcggagacatacgtggcttagtgtgacttgacaaaaggagggttacgtgtcaaaagagttggtgagt 52947565  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 46604670 - 46604714
Alignment:
Q  223 gaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa 267  Q
    ||||||||| ||||||| || ||||||||||||||||||| ||||    
T  46604670 gaccaaaaccaaaaacgtaaaagtgcaaagggatgaaattgaaaa 46604714  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 42775446 - 42775697
Alignment:
Q  18 aatttcacgtatttttgcaattcgtccttgtatc-ttttttgtttcaaaactctccttgtaagcttttttcgttttgcaaatggtccttcccattaactc 116  Q
    |||||| ||| ||||||||| ||||||||||||| |||||||||||||||   |||||||||| |  |  |  ||||||| | |||| |||| |||||||    
T  42775446 aatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttactagccgtttgcaattcgtccctcccgttaactc 42775545  T
Q  117 ccattacaaaaatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagtggctag- 215  Q
    || ||||||||| |    ||||||||||||||||||||| |||  | |||||  |||||||||     ||| ||||||| |||| ||  |||||| |||     
T  42775546 ccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaagcttgcttatgtgtcaagagagatgatgagtggttaga 42775645  T
Q  216 attcagggaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa 267  Q
    |   |||||||||||| ||||||| || | |||| |||||||||||||||||    
T  42775646 aaggagggaccaaaaccaaaaacgcaaaattgcagagggatgaaattaaaaa 42775697  T

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Target: scaffold0524 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 267
Target Start/End: Complemental strand, 9029 - 8851
Alignment:
Q  90 tttgcaaatggtccttcccattaactcccattacaaaaatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacg 189  Q
    ||||||| | |||| |||| ||||||||| ||||||||| |    ||||| ||||||||||||||||||   | |||||  |||||||||   ||||| |    
T  9029 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggtagacggagacacacgtggtgaagtgtgagttggcaaaagctttgttatg 8930  T
Q  190 tgtcaaaagagttggggagtggctagattc-agggaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa 267  Q
    |||||| |||| ||  |||||||||||    |||||||||||| |||| || || | |||| |||||||||||||||||    
T  8929 tgtcaagagagatgatgagtggctagaaaggagggaccaaaaccaaaaccgcaaaattgcagagggatgaaattaaaaa 8851  T

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Target: scaffold0472 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 10479 - 10337
Alignment:
Q  18 aatttcacgtatttttgcaattcgtccttgtatctttttt-gtttcaaaactctccttgtaagcttttttcgttttgcaaatggtccttcccattaactc 116  Q
    |||||| ||| ||||||||| |||||| |||||||||||| |||||||||   ||||| |||| |  |  |  ||||||| | |||| |||| |||||||    
T  10479 aatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttataagttactagccgtttgcaattcgtccctcccgttaactc 10380  T
Q  117 ccattacaaaaatggctaggtggcagacggagacacacgtggc 159  Q
    || ||||||||| |    |||||||||||||||||||||||||    
T  10379 ccgttacaaaaacgttgtggtggcagacggagacacacgtggc 10337  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 45981433 - 45981571
Alignment:
Q  18 aatttcacgtatttttgcaattcgtccttgtatc-ttttttgtttcaaaactctccttgtaagcttttttcgttttgcaaatggtccttcccattaactc 116  Q
    |||||| ||| ||||||||| ||||||||||||| |||||||||||||||   |||||||||| |  |  |  ||||||| | |||| |||| |||||||    
T  45981433 aatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttactagccgtttgcaattcgtccctcccgttaactc 45981532  T
Q  117 ccattacaaaaatggctaggtggcagacggagacacacg 155  Q
    || ||||||||| |    ||| |||||||||||||||||    
T  45981533 ccgttacaaaaacgttgtggttgcagacggagacacacg 45981571  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 8391427 - 8391476
Alignment:
Q  18 aatttcacgtatttttgcaattcgtccttgtatc-ttttttgtttcaaaa 66  Q
    |||||| ||| ||||||||| ||||||||||||| |||||||||||||||    
T  8391427 aatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaa 8391476  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 28848584 - 28848632
Alignment:
Q  18 aatttcacgtatttttgcaattcgtccttgtatcttttttgtttcaaaa 66  Q
    |||||| ||| ||||||||| |||||| |||||||||||||||||||||    
T  28848584 aatttcgcgtgtttttgcaaatcgtccctgtatcttttttgtttcaaaa 28848632  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 5236379 - 5236512
Alignment:
Q  135 ggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagtggctagattc-agggaccaaaacga 233  Q
    ||||| ||| |||||||||||||||  |  ||||  ||||||||| ||  ||| ||||||| |||| ||  |||||||||||    ||||||||| || |    
T  5236379 ggtggtagatggagacacacgtggcgaatggtgagttggcaaaagcagaattatgtgtcaagagagatgatgagtggctagaaaggagggaccaagacca 5236478  T
Q  234 aaaacgaaagagtgcaaagggatgaaattaaaaa 267  Q
    |||||| || | ||||||||||||||||||||||    
T  5236479 aaaacgcaaaattgcaaagggatgaaattaaaaa 5236512  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 28563604 - 28563652
Alignment:
Q  219 cagggaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa 267  Q
    ||||||||||||| ||||||||||  || ||||||||| ||||||||||    
T  28563604 cagggaccaaaaccaaaaacgaaaaggtacaaagggataaaattaaaaa 28563652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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