View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8873_low_12 (Length: 325)

Name: NF8873_low_12
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8873_low_12
NF8873_low_12
[»] chr3 (1 HSPs)
chr3 (18-314)||(38365139-38365433)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 38365433 - 38365139
Alignment:
Q  18 aaatttccacgttagtggtaggtattgtgatatactctttggattatttaattggcttatgtccacaaacactttctatagtttgtacttttacacgcca 117  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38365433 aaatttccacgttagtggtaggtattgtgata--ctctttggattatttaactggcttatgtccaaaaacactttctatagtttgtacttttacacgcca 38365336  T
Q  118 attttctatccatatcaatgatatcatattatcatgtcactataataataattagaaaagagaaaagaagagcaaacctgattgaatggaagaacatcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38365335 attttctatccatatcaatgatatcatattatcatgtcactataataataattagaaaagagaaaagaagagcaaacctgattgaattgaagaacatcag 38365236  T
Q  218 atttgaacctcacacgatcacctttgtcacaacgaatatcttctgaaacatctttaatagtaacaccacctggtaccataatatctctcttgttcat 314  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38365235 atttaaacctcacacgatcacctttgtcacaacgaatatcttctgaaacatctttaatagtaacaccacctggtaccataatatctctcttgttcat 38365139  T

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