View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_14 (Length: 309)
Name: NF8873_low_14
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 36753242 - 36753522
Alignment:
| Q |
18 |
catatattataaatttcggtgtctaaaattttgaggtcccaaaattaaaatatgacctctaaaatgtttaagacaactctgttactatgtaactaatttc |
117 |
Q |
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| T |
36753242 |
catatattatcaatttcgatgtctaaaattttgaggtcccaaaattaaaacatgacatctaaaatgtttaagacaactctgttactatgtaactaacttc |
36753341 |
T |
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| Q |
118 |
tacatctttaataatctggggagtatttgacactcagccaaagttaatctaatgtagtaaatgagtaggaaaataatagatgcatgaattatggcaaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36753342 |
tacatctttaataatctggggagtatttgacactcagccaaagtaaatctaacgtagtaaatgagtaggaaaataatagatacatgaattatggcaaatc |
36753441 |
T |
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| Q |
218 |
atgttcttcatataagaagtggcagaggcatattcatggtaattgtgtctttggaccatagggcaacaacatcacaggttc |
298 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
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| T |
36753442 |
atgttcttcatataagaagtggcagaggcctattcatggtcattatgtctttggaccatagggcaacaacatcacatgttc |
36753522 |
T |
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