View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_15 (Length: 299)
Name: NF8873_low_15
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 16934851 - 16934715
Alignment:
| Q |
1 |
atgacgatgacaatagatcgagaatccatgcattaattggaagatttttagaaatatatagtgttgccgctaaaaatatgaatacgaatttcattaagaa |
100 |
Q |
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| T |
16934851 |
atgacgacgacaatagatcgagaatccatgcattaattggaagatttttagaaatatatagtgttgccgctaaaaatatgaatacgaatttcattaagaa |
16934752 |
T |
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| Q |
101 |
ataaagatatatcgttaagagtttcacattagataaa |
137 |
Q |
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| T |
16934751 |
ataaagatatatcgttaagagtttcacattagataaa |
16934715 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 16931630 - 16931566
Alignment:
| Q |
133 |
ataaaagataatctaaacaaatgtgttagattaaatcacaatttttaagatggtatatgttggtt |
197 |
Q |
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| T |
16931630 |
ataaaagataatctaaacaaatgtgttagattaaatcacaatttttaagatggtatatgttggtt |
16931566 |
T |
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