View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_19 (Length: 268)
Name: NF8873_low_19
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 33 - 258
Target Start/End: Complemental strand, 927297 - 927072
Alignment:
| Q |
33 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaagctatataaaattgtggtagattagt |
132 |
Q |
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| T |
927297 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaaggtatataaaattgtggtagattagt |
927198 |
T |
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| Q |
133 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
232 |
Q |
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| T |
927197 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
927098 |
T |
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| Q |
233 |
gatgcctatccatcctgtctctgctc |
258 |
Q |
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| T |
927097 |
gatgcctatccatcctgtttctgctc |
927072 |
T |
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