View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_20 (Length: 255)
Name: NF8873_low_20
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 8285903 - 8286135
Alignment:
| Q |
5 |
tttcattgtattatttgctttgtgctacaaaacgaagggtttgataaagcttccaccaaatgttacagttccagcagtgatagcatttggagattcaata |
104 |
Q |
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| T |
8285903 |
tttcattgtattatttgctttgtgctacaaaacgaagggtttgataaagcttccaccaaatgttacagttccagcagtgatagcatttggagattcaata |
8286002 |
T |
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| Q |
105 |
gttgattcaggaaacaataacgacctcaaaactttggtcaaatgcaatttccctccttatggcaaagattttcaaggtggtgtcccaactggtcgttttt |
204 |
Q |
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| T |
8286003 |
gttgattcaggaaacaataacgacctcaaaactttggtcaaatgcaatttccctccttatggcaaagattttcaaggtggtgtcccaactggtcgttttt |
8286102 |
T |
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| Q |
205 |
gcaatggaaaaatcccctcagatatacttggta |
237 |
Q |
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| T |
8286103 |
gcaatggaaaaatcccctcagatatacttggta |
8286135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 8231001 - 8231072
Alignment:
| Q |
54 |
cttccaccaaatgttacagttccagcagtgatagcatttggagattcaatagttgattcaggaaacaataac |
125 |
Q |
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| T |
8231001 |
cttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataac |
8231072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 53294641 - 53294800
Alignment:
| Q |
57 |
ccaccaaatgttacagttccagcagtgatagcatttggagattcaatagttgattcaggaaacaataacgacctcaaaactttggtcaaatgcaatttcc |
156 |
Q |
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| T |
53294641 |
ccaccaaatgttacaattcctgcactcatagcttttggagattctatcatggatacaggaaataacaataacatcaaaacaatcgtcaagtgcaatttcc |
53294740 |
T |
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| Q |
157 |
ctccttatggcaaagattttcaaggtggtgtcccaactggtcgtttttgcaatggaaaaa |
216 |
Q |
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| T |
53294741 |
ctccttatggtcaagattttgagggagggattccaactggtcgattttgcaacggaaaaa |
53294800 |
T |
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