View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8873_low_4 (Length: 498)
Name: NF8873_low_4
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_4 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 33116108 - 33116590
Alignment:
| Q |
16 |
cattggaccatgaatggaaaccaaattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttc |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116108 |
cattggaccatgaaaggaaaccaaattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttc |
33116207 |
T |
|
| Q |
116 |
cggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116208 |
cggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgta |
33116307 |
T |
|
| Q |
216 |
tgctcaaaatgcaattggagtgagaaatgtgcttatgcttttgggtgtggccaatttcttggggatgatgtttacattcttggttcctgaatctaaagga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116308 |
tgctcaaaatgcaattggagtgagaaatgtgcttctgcttttgggtgtggccaatttcttggggatgatgtttacattcttggttcctgaatctaaagga |
33116407 |
T |
|
| Q |
316 |
aaatctttggaagaaatttctggtgaagctgaggaagaaactttggaggctggtattcaagtttaggacctttatttcttaattgagtaattaatttttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116408 |
aaatctttggaagaaatttctggtgaagctgaggaagaaactttggaggctggtattcaagtttaggacctttatttcttaattgagtaattaatttttt |
33116507 |
T |
|
| Q |
416 |
aagtagtttgtaggaagaaactaggcattgaagttgtagtatttctttatttagtttttcttgacattcatgtgtttggttta |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116508 |
aagtagtttgtaggaagaaactaggcattgaagttgtagtatttctttatttagtttttcttgacattcatgtgtttggttta |
33116590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 16184990 - 16185170
Alignment:
| Q |
39 |
aattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaagg |
138 |
Q |
| |
|
|||||| |||||||| ||||| ||| | |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| ||| |
|
|
| T |
16184990 |
aattgggtttgttgtaatgtactcactcacattcttctttgctaattttggtccaaatgctacgacatttgttgtaccggcagagatttttccggctagg |
16185089 |
T |
|
| Q |
139 |
ctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
219 |
Q |
| |
|
|||||||| || |||||||| || || |||||||| ||||| || |||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
16185090 |
ctaaggtctacctgtcatggaatctcagctgctgcaggaaaggcaggagcaattgttggtgcatttggattcttgtatgct |
16185170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 16174372 - 16174192
Alignment:
| Q |
39 |
aattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaagg |
138 |
Q |
| |
|
|||||| |||||||| ||||| ||| | |||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||| ||||| ||| |
|
|
| T |
16174372 |
aattgggtttgttgtaatgtactcactaacattcttctttgctaattttggtccaaatgctacaacatttgttgtaccggcagagatttttccggctagg |
16174273 |
T |
|
| Q |
139 |
ctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
219 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||| ||||| || |||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
16174272 |
ttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaattgttggtgcatttggattcttgtatgct |
16174192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 16224380 - 16224560
Alignment:
| Q |
39 |
aattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaagg |
138 |
Q |
| |
|
|||||| |||||||| || || ||| | |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| ||| |
|
|
| T |
16224380 |
aattgggtttgttgtaatatactcactcacattcttctttgctaattttggtccaaatgctacgacatttgttgtaccggcagagatttttccggctagg |
16224479 |
T |
|
| Q |
139 |
ctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
219 |
Q |
| |
|
||||||| || |||||||| || || |||||||| ||||| || |||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
16224480 |
ttaaggtctacctgtcatggaatctcagctgctgcaggaaaggcaggagcaattgttggtgcatttggattcttgtatgct |
16224560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 33110090 - 33110270
Alignment:
| Q |
39 |
aattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaagg |
138 |
Q |
| |
|
|||||| |||||||| ||||| ||||| || ||||| ||||| ||||| ||||||||||| || || ||||| ||||| || |||||||||||||||||| |
|
|
| T |
33110090 |
aattgggtttgttgtaatgtactcattaactttcttttttgccaatttcggtccaaatgctaccacatttgttgttccagccgagattttcccggcaagg |
33110189 |
T |
|
| Q |
139 |
ctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
219 |
Q |
| |
|
|| || || || ||||| || || || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||| |
|
|
| T |
33110190 |
cttagatctacctgtcacggaatctcagctgctgcaggaaaggctggagcaattgttggtgcatttggatttttatatgct |
33110270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 37314955 - 37314775
Alignment:
| Q |
39 |
aattggttttgttgtcatgtattcattgacattcttctttgctaattttggtccaaatgcaacgacgtttgtggttccggcagagattttcccggcaagg |
138 |
Q |
| |
|
|||||| ||| |||| ||||| || |||| || |||||||| ||||||||||||||| |||| || ||||| || || || |||||||||||||| ||| |
|
|
| T |
37314955 |
aattggatttcttgttatgtacgcaatgacttttttctttgcaaattttggtccaaattcaaccacttttgttgtacctgccgagattttcccggctagg |
37314856 |
T |
|
| Q |
139 |
ctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttggtttcttgtatgct |
219 |
Q |
| |
|
| ||||| |||||||||||||||||| |||| || || |||||||||||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
37314855 |
ttgaggtctacatgtcatggtatatcctctgcagcagggaaagctggagcaattataggtgcatttggattcttatatgct |
37314775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 28816730 - 28816639
Alignment:
| Q |
115 |
ccggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatggtaggtgcttttgg |
206 |
Q |
| |
|
||||||||| | || || |||||||| | || ||||||||||| ||||||||||| ||||||||| | ||||| || || ||||||||||| |
|
|
| T |
28816730 |
ccggcagagctgtttcctgcaaggctccgttcgacatgtcatgggatatccgctgcagctggaaaatcaggagctatagtcggtgcttttgg |
28816639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University