View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_5 (Length: 456)
Name: NF8873_low_5
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 2211657 - 2211534
Alignment:
| Q |
278 |
aattcaatatttcccaaataattcaccaagtttaaaacgagtaattttgattcttcaactttacgctcttctgtatttactaatttctcatacacatttt |
377 |
Q |
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| T |
2211657 |
aattcaatatttcccaaataattcaccaagtttaaaacgagtaattttgattcttcaactttacgctcttctgtatttactaatttctcatacacatttt |
2211558 |
T |
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| Q |
378 |
gacaaaaaacactgacgtcacaat |
401 |
Q |
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| T |
2211557 |
gacaaaaaacactgacgtgacaat |
2211534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 2211820 - 2211689
Alignment:
| Q |
149 |
ccttgccttgaccccatttttgaacctccaccaaaaagaattaattatttgatccaactcttcacccaaagtagatggtaacaataaccatgaaatgcta |
248 |
Q |
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| T |
2211820 |
ccttgccttgaccacatttttgaacctccaccaaaaagaattgattatttgatcgaactcttcacccaaagtagatggtaacaatacccatgaaatgcta |
2211721 |
T |
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| Q |
249 |
acataaaagtttttcggtgttgttcatataat |
280 |
Q |
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| T |
2211720 |
acataaaagtttttcggtgttgttcatataat |
2211689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 2213291 - 2213177
Alignment:
| Q |
12 |
tggacatcaacgtttgtcgaacacgacaagatgttagtactttataacttattagtggagtgtatatttcttgatataaa-ctaacttgattccttataa |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2213291 |
tggacatcgacgtttgtcgaacacgacaagatgttagtgctttataacttattagtggagtgtatatttcttgatataaacctaacttgattccttataa |
2213192 |
T |
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| Q |
111 |
ttctttgtggagtgt |
125 |
Q |
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|||||||||| |||| |
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| T |
2213191 |
ttctttgtggtgtgt |
2213177 |
T |
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