View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_8 (Length: 404)
Name: NF8873_low_8
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_8 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 42188246 - 42187859
Alignment:
| Q |
1 |
caatgtacaaagaatggcctttctttcaaagtacaatagaccttattgagatggttttaggtaaagcagacactactatagctaagtactatgatgaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188246 |
caatgtacaaagaatggcctttctttcaaagtacaatagaccttattgaaatggttttaggtaaagcagacactactatagctaagtactatgatgaagc |
42188147 |
T |
|
| Q |
101 |
ccttgtgtcagaggagaggcaggaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaactt |
200 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188146 |
ccttgtatcagaggagaggcaagaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaactt |
42188047 |
T |
|
| Q |
201 |
cagcagaataataggagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188046 |
cagcagaataataggagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggc |
42187947 |
T |
|
| Q |
301 |
gtgatgacgacaaccttaaactcagagatgctttgcttatcactgtaaacgggattgctgctgggatgaggaataccggttaatgctg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
42187946 |
gtgatgacgacaaccttaaactcagagatgctttgcttatcactgtaaatgggattgctgctgggatgaggaataccggttaacgctg |
42187859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 379
Target Start/End: Original strand, 340832 - 341208
Alignment:
| Q |
3 |
atgtacaaagaatggcctttctttcaaagtacaatagaccttattgagatggttttaggtaaagcagacactactatagctaagtactatgatgaagccc |
102 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| || ||||| |||| | |||| || ||| | |||||||| || | |
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| T |
340832 |
atgtacaaagagtggcctttctttcaaagcataatagacctgattgagatggttttgggaaaagccgacatttctattgcaaagcagtatgatgaggcac |
340931 |
T |
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| Q |
103 |
ttgtgtcagaggagaggcaggaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaacttca |
202 |
Q |
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|||| |||||| |||| || ||||| ||| || ||||||| ||||||||| | ||| |||| |||||||| || ||| |||||||||| ||||||| |
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| T |
340932 |
ttgtttcagagaagagacaagaacttggttgtcagctaaggaacgagctcattacaactgagaagtttgtaacagttatttgtgggcacgacaaacttct |
341031 |
T |
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| Q |
203 |
gcagaataataggagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggcgt |
302 |
Q |
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||||||||||||| ||||||| |||| |||| || |||||||| |||||||| ||| ||||| |||||||||| ||||| || |||||||| || ||| |
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| T |
341032 |
gcagaataatagggcattgaggaagttgattgaaaatagacttccttttctcaaccccttgaacatgttgcaggtagagatacttaagaggttaagacgt |
341131 |
T |
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| Q |
303 |
gatgacgacaaccttaaactcagagatgctttgcttatcactgtaaacgggattgctgctgggatgaggaataccgg |
379 |
Q |
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|||||||| || |||||| ||||||| | | |||||||| | || || |||||||| ||||||||||| ||||| |
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| T |
341132 |
gatgacgataaacttaaagcaagagatgttctccttatcaccattaatggtattgctgccgggatgaggaacaccgg |
341208 |
T |
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